ggKbase home page

scnpilot_dereplicated_Clostridiales_2

scnpilot-dereplicated_Clostridiales_43_1
In projects: scnpilot-dereplicated  |  SCNpilot_bf_inoc  |  SCN_ET-SeqDB_Dereplicated

Consensus taxonomy: Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Displaying items 201-250 of 263 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_BF_INOC_scaffold_1710_curated
Order: Clostridiales (81.25%)
16 14109 bp 44.30 1.00 86.58
SCNpilot_BF_INOC_scaffold_2824_curated
Order: Clostridiales (85.71%)
14 14248 bp 47.19 1.00 92.05
SCNpilot_BF_INOC_scaffold_2516_curated
Order: Clostridiales (69.23%)
13 14437 bp 44.82 1.00 76.80
SCNpilot_BF_INOC_scaffold_1962_curated
Order: Clostridiales (80%)
20 14579 bp 44.63 1.00 85.44
SCNpilot_BF_INOC_scaffold_2140_curated
Order: Clostridiales (50%)
18 14590 bp 45.70 1.00 92.90
SCNpilot_BF_INOC_scaffold_2959_curated 14 14658 bp 39.72 1.00 74.66
SCNpilot_BF_INOC_scaffold_3241_curated
Order: Clostridiales (55.56%)
18 14688 bp 41.85 1.00 83.20
SCNpilot_BF_INOC_scaffold_3273_curated
Phylum: Firmicutes (75%)
12 15317 bp 45.80 1.00 88.08
SCNpilot_BF_INOC_scaffold_3245_curated
Phylum: Firmicutes (52.63%)
19 15392 bp 44.13 1.00 83.42
SCNpilot_BF_INOC_scaffold_2658_curated
Phylum: Firmicutes (62.5%)
16 15428 bp 44.67 1.00 61.37
SCNpilot_BF_INOC_scaffold_1176_curated
Order: Clostridiales (61.11%)
18 15703 bp 43.32 1.00 89.77
SCNpilot_BF_INOC_scaffold_1172_curated
Order: Clostridiales (71.43%)
14 15789 bp 45.25 1.00 88.41
SCNpilot_BF_INOC_scaffold_3676_curated
Species: BJP_IG2157_Clostridiales_52_13 (68.75%)
16 15982 bp 49.17 1.00 74.96
SCNpilot_BF_INOC_scaffold_2311_curated
Order: Clostridiales (55.56%)
18 16003 bp 46.24 1.00 82.82
SCNpilot_BF_INOC_scaffold_1945_curated
Order: Clostridiales (66.67%)
21 16060 bp 44.84 1.00 87.16
SCNpilot_BF_INOC_scaffold_2669_curated
Order: Clostridiales (53.33%)
15 16404 bp 40.97 1.00 84.46
SCNpilot_BF_INOC_scaffold_2262_curated
Order: Clostridiales (53.33%)
15 16602 bp 33.78 1.00 85.04
SCNpilot_BF_INOC_scaffold_2597_curated
Order: Clostridiales (68.75%)
16 16730 bp 44.55 1.00 78.85
SCNpilot_BF_INOC_scaffold_1528_curated
Order: Clostridiales (71.43%)
14 16927 bp 46.56 1.00 89.25
SCNpilot_BF_INOC_scaffold_2498_curated
Order: Clostridiales (62.5%)
24 17183 bp 44.46 1.00 84.18
SCNpilot_BF_INOC_scaffold_1983_curated
Domain: Bacteria (50%)
20 17227 bp 43.48 1.00 74.34
SCNpilot_BF_INOC_scaffold_1728_curated
Order: Clostridiales (71.43%)
21 17274 bp 46.81 1.00 84.93
SCNpilot_BF_INOC_scaffold_3648_curated
Order: Clostridiales (54.55%)
22 17278 bp 44.44 1.00 82.42
SCNpilot_BF_INOC_scaffold_1069_curated
Order: Clostridiales (68.75%)
16 17382 bp 36.41 1.00 93.58
SCNpilot_BF_INOC_scaffold_1968_curated
Order: Clostridiales (63.16%)
19 17586 bp 44.07 1.00 82.16
SCNpilot_BF_INOC_scaffold_1368_curated
Phylum: Firmicutes (50%)
20 18181 bp 40.22 1.00 71.70
SCNpilot_BF_INOC_scaffold_1812_curated
Domain: Bacteria (56.25%)
16 18393 bp 44.55 1.00 77.88
SCNpilot_BF_INOC_scaffold_1852_curated
Order: Clostridiales (61.9%)
21 18632 bp 41.50 1.00 72.23
SCNpilot_BF_INOC_scaffold_2160_curated
Phylum: Clostridiales (59.26%)
27 19012 bp 44.62 1.00 95.59
SCNpilot_BF_INOC_scaffold_3001_curated
Order: Clostridiales (84.21%)
19 19142 bp 41.08 1.00 79.93
SCNpilot_BF_INOC_scaffold_2073_curated
Order: Clostridiales (58.82%)
17 19180 bp 42.51 1.00 81.76
SCNpilot_BF_INOC_scaffold_1202_curated
Order: Clostridiales (78.95%)
19 19341 bp 41.94 1.00 87.11
SCNpilot_BF_INOC_scaffold_2266_curated
Phylum: Firmicutes (63.16%)
19 19399 bp 46.27 1.00 76.50
SCNpilot_BF_INOC_scaffold_2392_curated
Phylum: Firmicutes (50%)
18 19633 bp 40.67 1.00 80.83
SCNpilot_BF_INOC_scaffold_949_curated
Order: Clostridiales (72.22%)
18 19859 bp 48.34 1.00 85.58
SCNpilot_BF_INOC_scaffold_1460_curated
Order: Clostridiales (52.38%)
21 21664 bp 41.70 1.00 69.39
SCNpilot_BF_INOC_scaffold_998_curated
Order: Clostridiales (58.33%)
24 21783 bp 38.21 1.00 78.67
SCNpilot_BF_INOC_scaffold_1141_curated
Order: Clostridiales (50%)
24 22721 bp 44.59 1.00 76.48
SCNpilot_BF_INOC_scaffold_1648_curated
Order: Clostridiales (66.67%)
18 22900 bp 43.52 1.00 89.40
SCNpilot_BF_INOC_scaffold_1330_curated
Order: Clostridiales (73.91%)
23 23862 bp 43.42 1.00 82.51
SCNpilot_BF_INOC_scaffold_1221_curated
Phylum: Firmicutes (77.27%)
22 24391 bp 41.63 1.00 90.06
SCNpilot_BF_INOC_scaffold_1942_curated
Order: Clostridiales (70.83%)
24 24624 bp 41.55 1.00 82.02
SCNpilot_BF_INOC_scaffold_1738_curated
Order: Clostridiales (66.67%)
30 25595 bp 39.25 1.00 78.89
SCNpilot_BF_INOC_scaffold_2458_curated
Order: Clostridiales (70.83%)
24 25873 bp 42.41 1.00 75.74
SCNpilot_BF_INOC_scaffold_1341_curated
Order: Clostridiales (50%)
24 27676 bp 41.53 1.00 85.81
SCNpilot_BF_INOC_scaffold_1207_curated
Order: Clostridiales (74.19%)
31 27918 bp 46.03 1.00 89.44
SCNpilot_BF_INOC_scaffold_1617_curated
Order: Clostridiales (68%)
25 28230 bp 42.90 1.00 86.08
SCNpilot_BF_INOC_scaffold_2252_curated
Order: Clostridiales (50%)
22 28466 bp 39.42 1.00 85.60
SCNpilot_BF_INOC_scaffold_2141_curated
Class: Clostridia (70%)
20 28467 bp 42.68 1.00 80.56
SCNpilot_BF_INOC_scaffold_981_curated
Order: Clostridiales (62.96%)
27 28904 bp 44.43 1.00 82.68
Displaying items 201-250 of 263 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.