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scnpilot_solids1_trim150_scaffold_108

Search features with annotation key words

Displaying items 31-60 of 98 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_108_31
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24984..26396
DNA (1413bp) protein (471aa)
Conjugal transfer protein TraH n=2 Tax=Sphingomonadaceae RepID=T0G3R7_9SPHN rbh
Sex pilus assembly protein TraH {ECO:0000313|EMBL:AJA09651.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
TraH family protein; K12072 conjugative transfer pilus assembly protein TraH rbh
scnpilot_solids1_trim150_scaffold_108_32
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26402..30136
DNA (3735bp) protein (1245aa)
DNA transfer and F pilus assembly protein TraG n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6ESV8_SPHCR rbh
DNA transfer and F pilus assembly protein TraG {ECO:0000313|EMBL:AJA09652.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
DNA transfer and F pilus assembly protein TraG; K12056 conjugal transfer mating pair stabilization protein TraG rbh
scnpilot_solids1_trim150_scaffold_108_33
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30133..30579)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2GRX6_9SPHN
Putative membrane protein {ECO:0000313|EMBL:AJA09653.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_108_34
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31383..31622
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SBY8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJA09654.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_108_35
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31626..32054
DNA (429bp) protein (143aa)
PilT protein domain-containing protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SAQ6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJA09655.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
PilT protein domain-containing protein
scnpilot_solids1_trim150_scaffold_108_36
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32051..32974)
DNA (924bp) protein (308aa)
Putative nucleotidyltransferase n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z5C5_SPHJU rbh
Putative nucleotidyltransferase {ECO:0000313|EMBL:KFG88635.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
putative nucleotidyltransferase rbh
scnpilot_solids1_trim150_scaffold_108_37
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33008..33322)
DNA (315bp) protein (105aa)
Plasmid stabilization system n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EJZ9_9SPHN
Plasmid stabilization system {ECO:0000313|EMBL:EHJ58367.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
plasmid stabilization system protein
scnpilot_solids1_trim150_scaffold_108_38
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33325..33582)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPQ6_SPHAL
ParD protein {ECO:0000313|EMBL:GAO52923.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_108_39
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33989..34225)
DNA (237bp) protein (79aa)
UPI0003D0497F related cluster n=1 Tax=unknown RepID=UPI0003D0497F
RNA polymerase sigma factor {ECO:0000313|EMBL:ESZ86433.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
scnpilot_solids1_trim150_scaffold_108_40
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34603..35187
DNA (585bp) protein (195aa)
ECF-type sigma factor n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z5F9_SPHJU
ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
scnpilot_solids1_trim150_scaffold_108_41
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35184..36146
DNA (963bp) protein (321aa)
FecR/PupR family sigma factor regulatory protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248B248
anti-FecI sigma factor FecR
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
scnpilot_solids1_trim150_scaffold_108_42
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36205..39141
DNA (2937bp) protein (979aa)
Outer membrane cobalamin receptor protein n=1 Tax=Caulobacter sp. AP07 RepID=J3ATH8_9CAUL
TonB-dependent receptor
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
scnpilot_solids1_trim150_scaffold_108_43
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39135..41090
DNA (1956bp) protein (652aa)
Prolyl oligopeptidase family protein n=1 Tax=Caulobacter sp. AP07 RepID=J2H410_9CAUL
Putative peptidase {ECO:0000313|EMBL:KFG89437.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein
scnpilot_solids1_trim150_scaffold_108_44
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41134..42834)
DNA (1701bp) protein (567aa)
putative asparagine synthase; K01953 asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
Asparagine synthase (Glutamine-hydrolyzing) n=1 Tax=Caulobacter sp. AP07 RepID=J3AUC5_9CAUL
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
scnpilot_solids1_trim150_scaffold_108_45
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42831..43481)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGU8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KFG89439.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_108_46
unknown

Not on your lists

comp(43526..43660)
DNA (135bp) protein (45aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_108_47
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43762..44382)
DNA (621bp) protein (207aa)
Putative GntR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJU4_9SPHN
Transcriptional regulator, gntr family {ECO:0000313|EMBL:KFG89441.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
GntR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_108_48
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44379..45284)
DNA (906bp) protein (302aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00037DCF1D
Uncharacterized protein {ECO:0000313|EMBL:KFG89442.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
Phytanoyl-CoA dioxygenase
scnpilot_solids1_trim150_scaffold_108_49
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45295..45909)
DNA (615bp) protein (205aa)
Acyl-homoserine-lactone synthase {ECO:0000256|RuleBase:RU361135}; EC=2.3.1.184 {ECO:0000256|RuleBase:RU361135};; Autoinducer synthesis protein {ECO:0000256|RuleBase:RU361135}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
N-acyl-L-homoserine lactone synthetase n=1 Tax=Sphingobium sp. AP49 RepID=J2CNY0_9SPHN
autoinducer synthesis protein
scnpilot_solids1_trim150_scaffold_108_50
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45989..46729)
DNA (741bp) protein (247aa)
LuxR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJU1_9SPHN
LuxR family transcriptional regulator {ECO:0000313|EMBL:KFG89444.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
LuxR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_108_51
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47076..47594
DNA (519bp) protein (173aa)
Uncharacterized protein n=2 Tax=Sphingobium RepID=T0H4B3_9SPHN
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:KFG89449.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
LuxR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_108_52
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47655..47987
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ78_SPHAL
Uncharacterized protein {ECO:0000313|EMBL:AJA09661.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_108_53
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48027..48500
DNA (474bp) protein (158aa)
Uncharacterized protein n=2 Tax=Sphingobium RepID=T0IDS2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KGB51972.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_108_54
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48593..49432
DNA (840bp) protein (280aa)
DNA repair protein RadC n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ77_SPHAL
DNA repair protein RadC {ECO:0000313|EMBL:KGB59364.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
DNA repair protein RadC
scnpilot_solids1_trim150_scaffold_108_55
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49668..50429
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D7U9_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:KFG89445.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_108_56
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50466..50978)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CM74_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:AJA09676.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_108_57
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51100..54036)
DNA (2937bp) protein (979aa)
UPI0003D5FAD8 related cluster n=1 Tax=unknown RepID=UPI0003D5FAD8 rbh
TraI/trwC-like protein {ECO:0000313|EMBL:AJA09677.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
TrwC protein rbh
scnpilot_solids1_trim150_scaffold_108_58
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54033..56060)
DNA (2028bp) protein (676aa)
Type IV conjugative transfer system coupling protein TraD n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CQZ0_SPHYA rbh
VirD4/TraD-like protein {ECO:0000313|EMBL:AJA09678.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
VirD4/TraD-like protein rbh
scnpilot_solids1_trim150_scaffold_108_59
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56057..56380)
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000362644D
Uncharacterized protein {ECO:0000313|EMBL:AJA09679.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_108_60
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56802..57107
DNA (306bp) protein (102aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IHS8_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA93959.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Displaying items 31-60 of 98 in total

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