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scnpilot_solids1_trim150_scaffold_362_curated

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_362_curated_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(45..455)
DNA (411bp) protein (137aa)
30S ribosomal protein S6 n=1 Tax=Rhodanobacter denitrificans RepID=I4WTK2_9GAMM
SSU ribosomal protein S6P
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_362_curated_2
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(656..982)
DNA (327bp) protein (109aa)
Iron-sulfur cluster assembly accessory protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W523_9GAMM
Iron-sulfur cluster assembly accessory protein {ECO:0000313|EMBL:EIL94564.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Iron-sulfur cluster assembly accessory protein
scnpilot_solids1_trim150_scaffold_362_curated_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1111..2526
DNA (1416bp) protein (472aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5R8_9GAMM
scnpilot_solids1_trim150_scaffold_362_curated_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2541..3395
DNA (855bp) protein (285aa)
Maltose operon periplasmic protein (MalM) n=1 Tax=Rhodanobacter denitrificans RepID=I4WTJ9_9GAMM
Maltose operon periplasmic protein precursor (MalM)
Maltose operon periplasmic protein (MalM) {ECO:0000313|EMBL:AGG88328.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_362_curated_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3392..3706
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNA0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL88691.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_362_curated_6
Pandoraea sp. RB-44, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3900..4565
DNA (666bp) protein (222aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=1380774 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. RB-44.;"
carbonic anhydrase; K01673 carbonic anhydrase [EC:4.2.1.1]
Beta carbonic anhydrase n=1 Tax=Pandoraea sp. RB-44 RepID=V5UEE6_9BURK
scnpilot_solids1_trim150_scaffold_362_curated_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4562..5359)
DNA (798bp) protein (266aa)
N-formylglutamate amidohydrolase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTJ3_9GAMM
N-formylglutamate amidohydrolase
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:AGG88322.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_362_curated_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5518..6876
DNA (1359bp) protein (453aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WKW6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM00108.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_362_curated_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7041..7616
DNA (576bp) protein (192aa)
Cell wall-associated hydrolase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQA0_9GAMM
Cell wall-associated hydrolase {ECO:0000313|EMBL:EIM01642.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
cell wall-associated hydrolase, invasion-associated protein
scnpilot_solids1_trim150_scaffold_362_curated_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7714..8199)
DNA (486bp) protein (162aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQ99_9GAMM
FKBP-type peptidyl-prolyl cis-trans isomerase
scnpilot_solids1_trim150_scaffold_362_curated_11
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8245..9495)
DNA (1251bp) protein (417aa)
Arabinose efflux permease family protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NCB4_9GAMM
Sugar transporter {ECO:0000313|EMBL:KJV27788.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
arabinose efflux permease family protein
scnpilot_solids1_trim150_scaffold_362_curated_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9630..10313
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJF3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87344.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase
scnpilot_solids1_trim150_scaffold_362_curated_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10537..11859
DNA (1323bp) protein (441aa)
ATP-dependent RNA helicase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTI4_9GAMM
DNA/RNA helicase, superfamily II
DNA/RNA helicase, superfamily II {ECO:0000313|EMBL:AGG88313.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_362_curated_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11933..12775)
DNA (843bp) protein (281aa)
Esterase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTI3_9GAMM
S-formylglutathione hydrolase
S-formylglutathione hydrolase {ECO:0000313|EMBL:AGG88312.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_362_curated_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12917..14833
DNA (1917bp) protein (639aa)
DNA/RNA helicase, superfamily II (EC:5.99.1.-)
ATP-dependent RNA helicase DeaD {ECO:0000256|HAMAP-Rule:MF_00964}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00964};; Cold-shock DEAD box protein A {ECO:0000256|HAMAP-Rule:MF_00964}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
ATP-dependent RNA helicase DeaD n=1 Tax=Rhodanobacter denitrificans RepID=M4NKK8_9GAMM
scnpilot_solids1_trim150_scaffold_362_curated_16
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15018..15875)
DNA (858bp) protein (286aa)
Zinc metallopeptidase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJE4_9GAMM
Zinc metallopeptidase {ECO:0000313|EMBL:EIL87335.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative metalloprotease
scnpilot_solids1_trim150_scaffold_362_curated_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15991..16383
DNA (393bp) protein (131aa)
Membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG) n=1 Tax=Rhodanobacter denitrificans RepID=I4WTH7_9GAMM
MAPEG family
Membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG) {ECO:0000313|EMBL:EIM01632.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_362_curated_18
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16469..17206
DNA (738bp) protein (246aa)
Putative metal-dependent membrane protease n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJE2_9GAMM
Putative metal-dependent membrane protease {ECO:0000313|EMBL:EIL87333.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative metal-dependent membrane protease
scnpilot_solids1_trim150_scaffold_362_curated_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17113..17799)
DNA (687bp) protein (229aa)
Maf-like protein UUA_03793 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQ88_9GAMM
MAF protein
Maf-like protein UUA_03793 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_362_curated_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17799..18245)
DNA (447bp) protein (149aa)
Acetyltransferase, GNaT family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5P4_9GAMM
Acetyltransferase, GNaT family protein {ECO:0000313|EMBL:EIL94785.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
acetyltransferase
scnpilot_solids1_trim150_scaffold_362_curated_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18322..18777)
DNA (456bp) protein (152aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomon
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Rhodanobacter denitrificans RepID=M4NED8_9GAMM
rRNA large subunit m3Psi methyltransferase RlmH
scnpilot_solids1_trim150_scaffold_362_curated_22
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18850..19242)
DNA (393bp) protein (131aa)
Ribosomal silencing factor RsfS n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQ85_9GAMM
iojap-like ribosome-associated protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_362_curated_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19397..19678)
DNA (282bp) protein (94aa)
Acetyltransferase-like protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5N7_9GAMM
Acetyltransferase-like protein {ECO:0000313|EMBL:EIL94778.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative acetyltransferase
scnpilot_solids1_trim150_scaffold_362_curated_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19762..20427)
DNA (666bp) protein (222aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
nicotinate/nicotinamide nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTF8_9GAMM
scnpilot_solids1_trim150_scaffold_362_curated_25
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20424..21434)
DNA (1011bp) protein (337aa)
DNA polymerase III, delta subunit (EC:2.7.7.7)
DNA polymerase III subunit delta n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJC7_9GAMM
DNA polymerase III subunit delta {ECO:0000313|EMBL:EIL87318.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_362_curated_26
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21434..21979)
DNA (546bp) protein (182aa)
Rare lipoprotein B n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQM1_9GAMM
Rare lipoprotein B
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_362_curated_27
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(21976..24762)
DNA (2787bp) protein (929aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
leuS; leucyl-tRNA synthetase (leucine-tRNA ligase; LeuRS) (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4]
Leucine--tRNA ligase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5M1_9GAMM
scnpilot_solids1_trim150_scaffold_362_curated_28
Terrabacter sp. 28, Terrabacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24925..27264)
DNA (2340bp) protein (780aa)
hypothetical protein n=1 Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI0003621AB1
Uncharacterized protein {ECO:0000313|EMBL:KJK12785.1}; TaxID=1619947 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Terrabacter.;" source="Terrabacter sp. 28.;"
GtrA family protein
scnpilot_solids1_trim150_scaffold_362_curated_29
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27242..27946)
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI0003708221
Methyltransferase type 11 {ECO:0000313|EMBL:CCV16184.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
type 11 methyltransferase
scnpilot_solids1_trim150_scaffold_362_curated_30
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27943..28923)
DNA (981bp) protein (327aa)
family 2 glycosyl transferase; K00721 dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
bactoprenol glucosyl transferase n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00037D1579
Family 2 glycosyl transferase {ECO:0000313|EMBL:GAO23617.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Displaying items 1-30 of 53 in total

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