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scnpilot_solids1_trim150_scaffold_102_curated

Search features with annotation key words

Displaying items 1-30 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_102_curated_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1236
DNA (1236bp) protein (412aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034BCF24
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65066.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_solids1_trim150_scaffold_102_curated_2
Hyphomonas chukchiensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1215..2108)
DNA (894bp) protein (298aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034BDD33
Uncharacterized protein {ECO:0000313|EMBL:KCZ58897.1}; TaxID=1280947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas chukchiensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_102_curated_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2218..4050)
DNA (1833bp) protein (611aa)
Transporter, monovalent cation:proton antiporter-2 (CPA2) family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WSF0_9GAMM
Kef-type potassium/proton antiporter, CPA2 family
Kef-type potassium/proton antiporter, CPA2 family {ECO:0000313|EMBL:AGG87444.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_102_curated_4
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4241..5806
DNA (1566bp) protein (522aa)
peptidase S10 n=1 Tax=Sphingomonas wittichii RepID=UPI00036AC47C
peptidase S10, serine carboxypeptidase
Peptidase S10, serine carboxypeptidase {ECO:0000313|EMBL:ABQ69468.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
scnpilot_solids1_trim150_scaffold_102_curated_5
Burkholderia sp. MSHR3999, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5938..6411)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Burkholderia thailandensis MSMB121 RepID=N0ANQ3_BURTH
KY49.ctg7180000000014_quiver, whole genome shotgun sequence {ECO:0000313|EMBL:KIP17851.1}; TaxID=1542965 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSHR3999.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_102_curated_6
unknown

Not on your lists

comp(6565..7362)
DNA (798bp) protein (266aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_102_curated_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7766..8200)
DNA (435bp) protein (145aa)
Glyoxalase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4W0W3_9GAMM
Glyoxalase {ECO:0000313|EMBL:EIL93104.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
glyoxalase; K04750 PhnB protein
scnpilot_solids1_trim150_scaffold_102_curated_8
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8268..8891)
DNA (624bp) protein (208aa)
glutathione S-transferase-like protein; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase domain-containing protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIM3_9GAMM
Glutathione S-transferase domain-containing protein {ECO:0000313|EMBL:EIL87064.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
scnpilot_solids1_trim150_scaffold_102_curated_9
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8949..9404)
DNA (456bp) protein (152aa)
Transcriptional regulator, MarR family n=2 Tax=Rhodobacter sphaeroides RepID=A3PRF2_RHOS1
MarR family transcriptional regulator
Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence {ECO:0000313|EMBL:ABA80724.1}; TaxID=272943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM; 158).;"
scnpilot_solids1_trim150_scaffold_102_curated_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9522..10130)
DNA (609bp) protein (203aa)
Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding n=1 Tax=Rhodanobacter denitrificans RepID=M4NAN3_9GAMM
conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding
Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding {ECO:0000313|EMBL:AGG87610.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_102_curated_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10236..11588
DNA (1353bp) protein (451aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NAR3_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87609.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_102_curated_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11725..13674)
DNA (1950bp) protein (650aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VV95_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91136.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
PGAP1-like protein
scnpilot_solids1_trim150_scaffold_102_curated_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13740..14759
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VV96_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91137.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_102_curated_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14915..15766)
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRW2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02204.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_102_curated_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16196..17311
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRW1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02203.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_102_curated_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17692..18534
DNA (843bp) protein (281aa)
PEP-CTERM putative exosortase interaction domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NRE0_9GAMM
PEP-CTERM putative exosortase interaction domain-containing protein
PEP-CTERM putative exosortase interaction domain-containing protein {ECO:0000313|EMBL:AGG90126.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_102_curated_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18730..19611
DNA (882bp) protein (294aa)
Dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis n=1 Tax=Rhodanobacter denitrificans RepID=M4NJ56_9GAMM
dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis
Dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis {ECO:0000313|EMBL:AGG90127.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_102_curated_18
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19864..20853
DNA (990bp) protein (330aa)
UDP-glucose 4-epimerase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2]
UDP-glucose 4-epimerase n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00037C516C
UDP-glucose 4-epimerase {ECO:0000313|EMBL:ACL73420.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
scnpilot_solids1_trim150_scaffold_102_curated_19
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21046..22053)
DNA (1008bp) protein (336aa)
Capsular polysaccharide biosynthesis protein I; K08679 UDP-glucuronate 4-epimerase [EC:5.1.3.6]
Capsular polysaccharide biosynthesis protein I n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7USE1_PSEUP
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
scnpilot_solids1_trim150_scaffold_102_curated_20
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22111..23403)
DNA (1293bp) protein (431aa)
wbpO; UDP-N-acetyl-D-galactosamine dehydrogenase; K02474 UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.-]
UDP-N-acetyl-D-galactosamine dehydrogenase n=1 Tax=gamma proteobacterium HdN1 RepID=E1VH33_9GAMM
Tax=BJP_08E140C01_Xanthomonadales_64_42
scnpilot_solids1_trim150_scaffold_102_curated_21
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23742..25574)
DNA (1833bp) protein (611aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Glutamine--fructose-6-phosphate aminotransferase [isomerizing]; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fruct
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Rhodanobacter denitrificans RepID=M4NAX1_9GAMM
glucosamine--fructose-6-phosphate aminotransferase, isomerizing
scnpilot_solids1_trim150_scaffold_102_curated_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25816..27216
DNA (1401bp) protein (467aa)
Sugar transferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WQV4_9GAMM
sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
Sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase {ECO:0000313|EMBL:AGG90159.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_102_curated_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27238..27861
DNA (624bp) protein (208aa)
Polysaccharide export protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRS8_9GAMM
Polysaccharide export protein {ECO:0000313|EMBL:EIM02170.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
periplasmic protein involved in polysaccharide export
scnpilot_solids1_trim150_scaffold_102_curated_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27913..29499
DNA (1587bp) protein (529aa)
Polysaccharide chain length determinant protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WQV2_9GAMM
polysaccharide chain length determinant protein, PEP-CTERM locus subfamily
Polysaccharide chain length determinant protein, PEP-CTERM locus subfamily {ECO:0000313|EMBL:AGG90157.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_102_curated_25
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29496..30404
DNA (909bp) protein (303aa)
Protein-tyrosine kinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRT0_9GAMM
ATPase involved in chromosome partitioning
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_102_curated_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30405..31955
DNA (1551bp) protein (517aa)
Uncharacterized protein, PEP-CTERM system associated n=1 Tax=Rhodanobacter denitrificans RepID=M4NGT1_9GAMM
uncharacterized protein, PEP-CTERM system associated
Uncharacterized protein, PEP-CTERM system associated {ECO:0000313|EMBL:AGG90155.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_102_curated_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31963..33030
DNA (1068bp) protein (356aa)
General secretion pathway protein-related protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WQU9_9GAMM
putative secretion ATPase, PEP-CTERM locus subfamily
Putative secretion ATPase, PEP-CTERM locus subfamily {ECO:0000313|EMBL:AGG90154.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_102_curated_28
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33027..33938
DNA (912bp) protein (304aa)
Polysaccharide deacetylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WQU8_9GAMM
polysaccharide deactylase family protein, PEP-CTERM locus subfamily
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_102_curated_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33952..35013
DNA (1062bp) protein (354aa)
FemAB-like protein, PEP-CTERM system-associated n=1 Tax=Rhodanobacter denitrificans RepID=I4WQU7_9GAMM
FemAB-related protein, PEP-CTERM system-associated
FemAB-related protein, PEP-CTERM system-associated {ECO:0000313|EMBL:AGG90152.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_102_curated_30

Not on your lists

35016..36266
DNA (1251bp) protein (417aa)
Glycosyl transferase group 1 n=1 Tax=mine drainage metagenome RepID=T0ZEE6_9ZZZZ
Glycosyl transferase group 1 {ECO:0000313|EMBL:EQD33008.1}; Glycosyl transferase, group 1 {ECO:0000313|EMBL:EQD42597.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
sugar transferase, PEP-CTERM/EpsH1 system associated
Displaying items 1-30 of 104 in total

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