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scnpilot_solids2_trim150_scaffold_1366_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1366_curated_1
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..476
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D3A1A8
Metal-dependent phosphohydrolase {ECO:0000313|EMBL:AIQ92313.1}; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
metal-dependent phosphohydrolase; K06952
scnpilot_solids2_trim150_scaffold_1366_curated_2
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(447..1223)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZU04_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EHM03534.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
hypothetical protein; K07090
scnpilot_solids2_trim150_scaffold_1366_curated_3
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1428..2180
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Alcanivorax sp. PN-3 RepID=U7HK14_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:GAO38992.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1366_curated_4
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2211..2480
DNA (270bp) protein (90aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
exodeoxyribonuclease VII small subunit (EC:3.1.11.6); K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
Exodeoxyribonuclease 7 small subunit n=1 Tax=Rhodovulum sp. PH10 RepID=J9DCR5_9RHOB
scnpilot_solids2_trim150_scaffold_1366_curated_5
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2768..4300)
DNA (1533bp) protein (511aa)
propionyl-CoA carboxylase subunit beta (EC:6.4.1.3); K01966 propionyl-CoA carboxylase beta chain [EC:6.4.1.3]
Acetyl-CoA carboxylase, carboxyltransferase component (Subunits alpha and beta) n=1 Tax=Microvirga sp. WSM3557 RepID=I4YWE7_9RHIZ
Acetyl-CoA carboxylase, carboxyltransferase component (Subunits alpha and beta) {ECO:0000313|EMBL:EIM28289.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
scnpilot_solids2_trim150_scaffold_1366_curated_6
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4397..5179)
DNA (783bp) protein (261aa)
ATPase n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI0003488ED5
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ46931.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
ATP12 ATPase
scnpilot_solids2_trim150_scaffold_1366_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5169..5825)
DNA (657bp) protein (219aa)
HAD family hydrolase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18]
Haloacid dehalogenase superfamily enzyme, subfamily IA n=1 Tax=Microvirga sp. WSM3557 RepID=I4YWE4_9RHIZ
Phosphoglycolate phosphatase {ECO:0000313|EMBL:KFC67491.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
scnpilot_solids2_trim150_scaffold_1366_curated_8
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5825..6913)
DNA (1089bp) protein (363aa)
RluA family pseudouridine synthase; K06179 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
Pseudouridine synthase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IPP0_XANP2
Pseudouridine synthase, RluA family {ECO:0000313|EMBL:ABS69986.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
scnpilot_solids2_trim150_scaffold_1366_curated_9
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7057..8367)
DNA (1311bp) protein (437aa)
AAA ATPase central domain protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A9K9_STAND
ATPase AAA; K07478 putative ATPase
AAA ATPase central domain protein {ECO:0000313|EMBL:ADH88785.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_1366_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8408..9823)
DNA (1416bp) protein (472aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031C24FD
Peptidase Do {ECO:0000313|EMBL:KFC67498.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
protease Do
scnpilot_solids2_trim150_scaffold_1366_curated_11
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9899..10744)
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003741A69
Phosphomannomutase {ECO:0000313|EMBL:KGT74670.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1366_curated_12
Ahrensia sp. R2A130, Ahrensia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10981..11415)
DNA (435bp) protein (145aa)
50S ribosomal protein L17 n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031BC5A6
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=744979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ahrensia.;" source="Ahrensia sp. R2A130.;"
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
scnpilot_solids2_trim150_scaffold_1366_curated_13
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11500..12516)
DNA (1017bp) protein (339aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha n=1 Tax=Microvirga sp. WSM3557 RepID=I4YWD2_9RHIZ
scnpilot_solids2_trim150_scaffold_1366_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12617..13006)
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=1 Tax=Methylobacterium sp. GXF4 RepID=I9X321_9RHIZ
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
scnpilot_solids2_trim150_scaffold_1366_curated_15
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13095..13463)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LLB8_RHITR
rpsM; 30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
scnpilot_solids2_trim150_scaffold_1366_curated_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13635..14219)
DNA (585bp) protein (195aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" sourc
adk; adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3]
Adenylate kinase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=KAD_AZOC5
scnpilot_solids2_trim150_scaffold_1366_curated_17
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14216..15547)
DNA (1332bp) protein (444aa)
preprotein translocase subunit SecY n=1 Tax=Xanthobacteraceae RepID=UPI000376E4EF
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids2_trim150_scaffold_1366_curated_18
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15657..16139)
DNA (483bp) protein (161aa)
50S ribosomal protein L15 n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000300BC82
rplO; 50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
scnpilot_solids2_trim150_scaffold_1366_curated_19

Not on your lists


comp(16150..16344)
DNA (195bp) protein (65aa)
50S ribosomal protein L30 n=1 Tax=Kaistia granuli RepID=UPI00035FE4EC
Uncharacterized protein {ECO:0000313|EMBL:KKN73256.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
scnpilot_solids2_trim150_scaffold_1366_curated_20
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16356..16487)
DNA (132bp) protein (44aa)
30S ribosomal protein S5 n=1 Tax=Methyloferula stellata RepID=UPI00037D4D3B
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
rpsE; 30s ribosomal protein S5; K02988 small subunit ribosomal protein S5
Displaying 20 items

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