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scnpilot_solids2_trim150_scaffold_103_curated

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Displaying items 31-60 of 188 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_103_curated_31
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(40014..41111)
DNA (1098bp) protein (366aa)
Putative permease n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVI8_9GAMM
Permease {ECO:0000313|EMBL:KGI78728.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
putative permease; K11720 lipopolysaccharide export system permease protein
scnpilot_solids2_trim150_scaffold_103_curated_32
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41123..42241)
DNA (1119bp) protein (373aa)
Putative permease n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNV6_9GAMM
Permease {ECO:0000313|EMBL:KGI78553.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
putative permease
scnpilot_solids2_trim150_scaffold_103_curated_33

Not on your lists

42315..43799
DNA (1485bp) protein (495aa)
leucyl aminopeptidase; K01255 leucyl aminopeptidase [EC:3.4.11.1]
Cytosol aminopeptidase n=1 Tax=mine drainage metagenome RepID=T1BQL6_9ZZZZ
Cytosol aminopeptidase {ECO:0000313|EMBL:EQD70873.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
scnpilot_solids2_trim150_scaffold_103_curated_34

Not on your lists

44176..46263
DNA (2088bp) protein (696aa)
hypothetical protein n=1 Tax=Nevskia ramosa RepID=UPI0003B6BECD
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48716.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_103_curated_35
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46283..49900)
DNA (3618bp) protein (1206aa)
Signal transduction histidine kinase n=3 Tax=Rhodanobacter denitrificans RepID=M4NJN1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KGI78727.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
signal transduction histidine kinase
scnpilot_solids2_trim150_scaffold_103_curated_36
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50005..50655
DNA (651bp) protein (217aa)
YceI like family protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDL2_9GAMM
Polyisoprenoid-binding protein {ECO:0000313|EMBL:GAN45894.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_103_curated_37
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50636..51205
DNA (570bp) protein (190aa)
Cytochrome B561 n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8KZA4_FRAAD
cytochrome B561; K12262 cytochrome b561
Cytochrome B561 {ECO:0000313|EMBL:AFC85208.1}; Flags: Precursor;; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
scnpilot_solids2_trim150_scaffold_103_curated_38
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51205..51765
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003738C77
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIM01496.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_103_curated_39
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51772..52005)
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037378BB
hypothetical protein
Glutaredoxin {ECO:0000313|EMBL:KER84352.1}; TaxID=454957 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. celebensis.;"
scnpilot_solids2_trim150_scaffold_103_curated_40
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52269..53651
DNA (1383bp) protein (461aa)
L-serine ammonia-lyase (EC:4.3.1.17)
L-serine dehydratase n=1 Tax=Rhodanobacter denitrificans RepID=I4WT79_9GAMM
L-serine dehydratase {ECO:0000313|EMBL:EIL87747.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids2_trim150_scaffold_103_curated_41
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53746..55485
DNA (1740bp) protein (580aa)
general secretion pathway protein E n=1 Tax=Dyella japonica RepID=UPI0002EC5973
General secretion pathway protein GspE {ECO:0000313|EMBL:AIF46596.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
type II secretion system protein E (GspE)
scnpilot_solids2_trim150_scaffold_103_curated_42
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55493..56701
DNA (1209bp) protein (403aa)
General secretion pathway protein F n=1 Tax=Rhodanobacter denitrificans RepID=M4NTG9_9GAMM
general secretion pathway protein F
General secretion pathway protein F {ECO:0000313|EMBL:AGG90786.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_103_curated_43
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56905..57327
DNA (423bp) protein (141aa)
general secretion pathway protein G n=1 Tax=Dyella ginsengisoli RepID=UPI000345A671
general secretion pathway protein G
General secretion pathway protein G {ECO:0000313|EMBL:AGG90785.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_103_curated_44
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57266..57775
DNA (510bp) protein (170aa)
general secretion pathway protein H n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5A0A9
Uncharacterized protein {ECO:0000313|EMBL:KFN43190.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
general secretion pathway protein H
scnpilot_solids2_trim150_scaffold_103_curated_45
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57768..58205
DNA (438bp) protein (146aa)
General secretion pathway protein I n=2 Tax=Stenotrophomonas maltophilia RepID=M3DZU2_STEMA
xpsI; putative general secretion pathway protein I; K02458 general secretion pathway protein I
Putative general secretion pathway protein I {ECO:0000313|EMBL:CAQ44272.1}; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
scnpilot_solids2_trim150_scaffold_103_curated_46
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58202..58849
DNA (648bp) protein (216aa)
General secretion pathway protein J n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGR1_9GAMM
General secretion pathway protein J {ECO:0000313|EMBL:EIL98652.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
prepilin-type N-terminal cleavage/methylation domain-containing protein
scnpilot_solids2_trim150_scaffold_103_curated_47
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58846..59736
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000371E1EC
General secretion pathway protein GspK {ECO:0000313|EMBL:GAN45824.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
type II secretory pathway, component PulK
scnpilot_solids2_trim150_scaffold_103_curated_48
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

59750..60877
DNA (1128bp) protein (376aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003604D0C
Fimbrial assembly protein {ECO:0000313|EMBL:GAN45825.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
Tfp pilus assembly protein PilN
scnpilot_solids2_trim150_scaffold_103_curated_49
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60867..61463
DNA (597bp) protein (199aa)
General secretion pathway protein GspM n=1 Tax=Rhodanobacter sp. 115 RepID=I4W756_9GAMM
General secretion pathway protein GspM {ECO:0000313|EMBL:EIL88098.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Tfp pilus assembly protein PilO
scnpilot_solids2_trim150_scaffold_103_curated_50
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61460..62146
DNA (687bp) protein (229aa)
General secretion pathway protein N n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W359_9GAMM
General secretion pathway protein N {ECO:0000313|EMBL:EIL93900.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_103_curated_51
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62194..64914
DNA (2721bp) protein (907aa)
General secretion pathway protein D n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W358_9GAMM
General secretion pathway protein GspD {ECO:0000313|EMBL:AHX14930.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
general secretion pathway protein D
scnpilot_solids2_trim150_scaffold_103_curated_52
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65048..65926
DNA (879bp) protein (293aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0003173DF9
Glycosyl transferase family 2 {ECO:0000313|EMBL:AIF49300.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
putative glycosyltransferase
scnpilot_solids2_trim150_scaffold_103_curated_53
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66010..66546
DNA (537bp) protein (179aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Peptide deformylase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VNX5_9GAMM
peptide deformylase
scnpilot_solids2_trim150_scaffold_103_curated_54
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(66556..69420)
DNA (2865bp) protein (955aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VKR3_9GAMM
scnpilot_solids2_trim150_scaffold_103_curated_55
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70282..71406)
DNA (1125bp) protein (375aa)
Rod shape-determining protein RodA n=1 Tax=Rhodanobacter sp. 115 RepID=I4VQF8_9GAMM
Rod shape-determining protein RodA {ECO:0000313|EMBL:EIL89449.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
cell elongation-specific peptidoglycan biosynthesis regulator RodA
scnpilot_solids2_trim150_scaffold_103_curated_56
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(71403..73322)
DNA (1920bp) protein (640aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Penicillin-binding protein 2 n=1 Tax=Rhodanobacter sp. 115 RepID=I4VQF7_9GAMM
Penicillin-binding protein 2 {ECO:0000313|EMBL:GAN45200.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
scnpilot_solids2_trim150_scaffold_103_curated_57
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73319..73813)
DNA (495bp) protein (165aa)
Rod shape-determining protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFU2_9GAMM
Rod shape-determining protein {ECO:0000313|EMBL:EIL98333.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
rod shape-determining protein MreD
scnpilot_solids2_trim150_scaffold_103_curated_58
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73810..74799)
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000348BDEB
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
rod shape-determining protein MreC
scnpilot_solids2_trim150_scaffold_103_curated_59
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75134..76180)
DNA (1047bp) protein (349aa)
rod shape-determining protein Mbl n=1 Tax=Dyella ginsengisoli RepID=UPI000345BFEC
Rod shape-determining protein MreB {ECO:0000313|EMBL:EIL98335.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
rod shape-determining protein MreB
scnpilot_solids2_trim150_scaffold_103_curated_60
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76380..77318
DNA (939bp) protein (313aa)
sugar kinase; K00856 adenosine kinase [EC:2.7.1.20]
sugar kinase n=1 Tax=Rudaea cellulosilytica RepID=UPI00037CD3AB
Sugar kinase {ECO:0000313|EMBL:KGO98821.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
Displaying items 31-60 of 188 in total

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