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2013_40cm_scaffold_1

Search features with annotation key words

Displaying items 1-30 of 668 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
2013_40cm_scaffold_1_1
RBG_16_Chloroflexi_54_11_curated, Chloroflexi, Bacteria

Not on your lists

2..1315
DNA (1314bp) protein (438aa)
Putative uncharacterized protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XUX7_9BACT
hypothetical protein Tax=RBG_16_Chloroflexi_54_11_curated
2013_40cm_scaffold_1_2
RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1599..1979
DNA (381bp) protein (127aa)
circadian clock protein KaiB n=1 Tax=Schlesneria paludicola RepID=UPI00029A203E
putative thioredoxin-like protein
KaiB domain-containing protein; K08481 circadian clock protein KaiB Tax=RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated
2013_40cm_scaffold_1_3
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1982..3253
DNA (1272bp) protein (424aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Fla
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI0003808F75
PAS/PAC sensor signal transduction histidine kinase
2013_40cm_scaffold_1_4
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3279..4727)
DNA (1449bp) protein (483aa)
PAP2 superfamily protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KQ71_SOLCM
PAP2 superfamily protein rbh
PAP2 superfamily protein {ECO:0000313|EMBL:AFD06366.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canaden
2013_40cm_scaffold_1_5
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

5164..5718
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Pontibacter roseus RepID=UPI00035EE490
hypothetical protein Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
hypothetical protein
2013_40cm_scaffold_1_6
Saccharicrinis fermentans, Saccharicrinis, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5815..6228)
DNA (414bp) protein (138aa)
Uncharacterized protein {ECO:0000313|EMBL:GAF05086.1}; TaxID=869213 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Saccharicrinis.;" source="Saccharicrinis fermentans
hypothetical protein AnHS1_10013 id=5035044 bin=GWA2_Bacteroidetes_33_15 species=Thermophagus xiamenensis genus=Thermophagus taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_33_15 organism_group=Bacteroidetes
secondary thiamine-phosphate synthase
2013_40cm_scaffold_1_7
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6366..7709
DNA (1344bp) protein (448aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y2G2_9SPHI
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:EHQ28010.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacter
two component, sigma54 specific, transcriptional regulator, Fis family
2013_40cm_scaffold_1_8
unknown

Not on your lists

comp(7754..8311)
DNA (558bp) protein (186aa)

This feature has no annotations

2013_40cm_scaffold_1_9
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(8520..9296)
DNA (777bp) protein (259aa)
Putative uncharacterized protein n=1 Tax=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) RepID=Q11S11_CYTH3
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
hypothetical protein
2013_40cm_scaffold_1_10
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9488..10066)
DNA (579bp) protein (193aa)
halocyanin precursor-like protein id=2001223 bin=GWD2_Bacteroidetes_40_43 species=Halococcus hamelinensis genus=Halococcus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
halocyanin precursor-like protein Tax=GWE2_Bacteroidetes_40_63_curated
2013_40cm_scaffold_1_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10282..10758)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDH5_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW00425.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Ni
2013_40cm_scaffold_1_12
unknown

Not on your lists

comp(11063..11239)
DNA (177bp) protein (59aa)

This feature has no annotations

2013_40cm_scaffold_1_13
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

11779..13638
DNA (1860bp) protein (620aa)
Fibronectin type III domain-containing protein n=1 Tax=Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Sio-4) RepID=I4AJY8_FLELS
fibronectin type III domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
fibronectin type III domain-containing protein
2013_40cm_scaffold_1_14
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13863..14558
DNA (696bp) protein (232aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L1Y2_HALH1
LytTR family two component transcriptional regulator
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:AEE50615.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobac
2013_40cm_scaffold_1_15
unknown

Not on your lists

14732..14893
DNA (162bp) protein (54aa)

This feature has no annotations

2013_40cm_scaffold_1_16
Flexibacter litoralis, Flexibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(14938..15624)
DNA (687bp) protein (229aa)
Response regulator of the LytR/AlgR family n=1 Tax=Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Sio-4) RepID=I4AJ58_FLELS
response regulator of the LytR/AlgR family
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:AFM03993.1}; TaxID=880071 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Flexibacter.;" source="Flexibacter lit
2013_40cm_scaffold_1_17

Not on your lists

15809..18661
DNA (2853bp) protein (951aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI000372E41F
Uncharacterized protein {ECO:0000313|EMBL:KKM53085.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
sensory transduction histidine kinase
2013_40cm_scaffold_1_18
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18793..19137)
DNA (345bp) protein (115aa)
Putative uncharacterized protein id=4491122 bin=GWC2_Deltaproteobacteria_66_88 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
hypothetical protein Tax=GWA2_Deltaproteobacteria_65_63_curated
hypothetical protein
2013_40cm_scaffold_1_19

Not on your lists

19651..19833
DNA (183bp) protein (61aa)
Putative uncharacterized protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WL31_GEOS8
Candidate division TM6 bacterium JCVI TM6SC1 contig_5_JCVI_TM6SC1_contig_986814..1049479, whole genome shotgun sequence {ECO:0000313|EMBL:KIX84901.1}; TaxID=1306947 species="Bacteria; candidate divisi
hypothetical protein
2013_40cm_scaffold_1_20
unknown

Not on your lists

19840..20202
DNA (363bp) protein (121aa)

This feature has no annotations

2013_40cm_scaffold_1_21
Flavobacterium reichenbachii, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

20260..22797
DNA (2538bp) protein (846aa)
ATP dependent DNA ligase n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FEP5_FLAJ1
DNA ligase {ECO:0000313|EMBL:KFF03018.1}; TaxID=362418 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium reichenbachii.;"
ATP dependent DNA ligase rbh
2013_40cm_scaffold_1_22
Flavobacterium reichenbachii, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22813..23625)
DNA (813bp) protein (271aa)
Probable DNA repair protein Fjoh_3304 n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=Y3304_FLAJ1
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=362418 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="F
Ku domain-containing protein
2013_40cm_scaffold_1_23
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23686..24462
DNA (777bp) protein (259aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y9N9_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ30541.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mu
2013_40cm_scaffold_1_24
unknown

Not on your lists

24529..24849
DNA (321bp) protein (107aa)

This feature has no annotations

2013_40cm_scaffold_1_25
GWF2_Bacteroidetes_43_11_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24833..26485
DNA (1653bp) protein (551aa)
Putative uncharacterized protein id=1742373 bin=GWE2_Bacteroidetes_42_24 species=Alistipes indistinctus genus=Alistipes taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
ABC-1 domain-containing protein; K03688 ubiquinone biosynthesis protein Tax=GWF2_Bacteroidetes_43_11_curated
ABC-1 domain-containing protein
2013_40cm_scaffold_1_26
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

26748..27191
DNA (444bp) protein (148aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
hypothetical protein AtheD1_10361 id=2037335 bin=GWD2_Bacteroidetes_33_33 species=Anaerophaga thermohalophila genus=Anaerophaga taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_33_33 organism_group=Bacteroidetes organism_desc=a152
hypothetical protein
2013_40cm_scaffold_1_27
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

27232..27681
DNA (450bp) protein (150aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
hypothetical protein AtheD1_10361 id=2037335 bin=GWD2_Bacteroidetes_33_33 species=Anaerophaga thermohalophila genus=Anaerophaga taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_33_33 organism_group=Bacteroidetes organism_desc=a152
2013_40cm_scaffold_1_28
BJP_IG2103_Bacteroidetes_37_22, Bacteroidetes, Bacteria

Not on your lists

comp(28616..28966)
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Flavobacteriaceae bacterium P7-3-5 RepID=UPI000373DDD4
Tax=BJP_IG2103_Bacteroidetes_37_22
2013_40cm_scaffold_1_29
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

29211..29540
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035F6EEC
Uncharacterized protein {ECO:0000313|EMBL:KIF31159.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
hypothetical protein
2013_40cm_scaffold_1_30
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

Not on your lists

comp(29553..31376)
DNA (1824bp) protein (608aa)
hypothetical protein id=7201229 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
hypothetical protein Tax=RIFOXYC12_FULL_TA06_54_24_curated
hypothetical protein
Displaying items 1-30 of 668 in total

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