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berkeley_reactor_200306_planktonic_scaffold_66144

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_66144_1
unknown

Not on your lists

comp(3..80)
DNA (78bp) protein (26aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_66144_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

197..1213
DNA (1017bp) protein (339aa)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00568}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00568};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Quinolinate synthase A n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIB7_9BACT
quinolinate synthetase complex subunit A
berkeley_reactor_200306_planktonic_scaffold_66144_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(1303..2403)
DNA (1101bp) protein (367aa)
Phosphate transporter n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIB1_9BACT
Phosphate transporter {ECO:0000313|EMBL:EEF60372.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
inorganic phosphate transporter
berkeley_reactor_200306_planktonic_scaffold_66144_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(2409..3038)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIB0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60371.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
pit accessory protein
berkeley_reactor_200306_planktonic_scaffold_66144_5
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3247..4581
DNA (1335bp) protein (445aa)
Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RUR2_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EEB79627.1}; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacterium HTCC2148.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_66144_6
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

4651..5739
DNA (1089bp) protein (363aa)
Phosphate-binding protein PstS n=2 Tax=Geobacter metallireducens RepID=Q39S55_GEOMG
phosphate ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_66144_7
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

5944..6822
DNA (879bp) protein (293aa)
Phosphate ABC transporter, inner membrane subunit PstC n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6ZV18_MELRP
phosphate ABC transporter, inner membrane subunit PstC
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_66144_8
Peptococcaceae bacterium BRH_c23, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6932..8059
DNA (1128bp) protein (376aa)
Phosphate transport system permease protein PstA n=1 Tax=uncultured bacterium F25-01 RepID=I3VIG0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KJS47753.1}; TaxID=1629714 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c23.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_66144_9
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

8079..8885
DNA (807bp) protein (269aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum infernorum (isolate V4) (Methylokorus infernorum; (strain V4)).;"
ABC-type phosphate transport system, ATPase component n=1 Tax=Methylacidiphilum infernorum (isolate V4) RepID=B3DYS7_METI4
pstB; phosphate ABC transporter ATPase
berkeley_reactor_200306_planktonic_scaffold_66144_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

8917..9594
DNA (678bp) protein (226aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLG7_9BACT
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
phosphate uptake regulator PhoU
berkeley_reactor_200306_planktonic_scaffold_66144_11
unknown

Not on your lists

9981..10070
DNA (90bp) protein (30aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_66144_12
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10080..11792
DNA (1713bp) protein (571aa)
Potassium-transporting ATPase A chain n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C4T4_DESTA
K+-transporting ATPase, KdpA
Tax=RBG_16_Deltaproteobacteria_64_85_curated
berkeley_reactor_200306_planktonic_scaffold_66144_13

Not on your lists

11792..13804
DNA (2013bp) protein (671aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
potassium-transporting ATPase subunit B n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744732
K+-transporting ATPase, B subunit
berkeley_reactor_200306_planktonic_scaffold_66144_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

13919..14503
DNA (585bp) protein (195aa)
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Potassium-transporting ATPase C chain n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSQ4_9BACT
K+-transporting ATPase, C subunit
berkeley_reactor_200306_planktonic_scaffold_66144_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

14680..15126
DNA (447bp) protein (149aa)
Transcriptional regulator, MarR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DCJ7_9BACT
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EDY15832.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
MarR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_66144_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

15174..15989
DNA (816bp) protein (272aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFR4_9BACT
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EEF61428.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
short chain dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_66144_17
Comamonadaceae bacterium B1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15994..17337
DNA (1344bp) protein (448aa)
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein n=1 Tax=Calothrix sp. PCC 7507 RepID=K9PPG4_9CYAN
flavodoxin reductase family 1
Flavodoxin reductase family 1 {ECO:0000313|EMBL:BAO83841.1}; TaxID=1458426 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium B1.;"
berkeley_reactor_200306_planktonic_scaffold_66144_18
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

17439..20114
DNA (2676bp) protein (892aa)
Osmosensitive K+ channel signal transduction histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSQ3_9BACT
kdpD; Osmosensitive K+ channel histidine kinase KdpD
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_planktonic_scaffold_66144_19
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

20111..20797
DNA (687bp) protein (229aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSQ2_9BACT
chemotaxis protein CheY
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_planktonic_scaffold_66144_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(20846..22204)
DNA (1359bp) protein (453aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAT6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF63121.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_66144_21
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(22386..24605)
DNA (2220bp) protein (740aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000368FE92
alpha-1,2-mannosidase
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_planktonic_scaffold_66144_22
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

25108..27867
DNA (2760bp) protein (920aa)
Beta-glucosidase (EC:3.2.1.21)
Beta-glucosidase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZN48_OPITP
Tax=RBG_13_Planctomycetes_62_9_curated
berkeley_reactor_200306_planktonic_scaffold_66144_23
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

27882..29579
DNA (1698bp) protein (566aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAT7_9BACT
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:EEF63122.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
histidine kinase
berkeley_reactor_200306_planktonic_scaffold_66144_24
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

29637..30269
DNA (633bp) protein (211aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAT8_9BACT
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:EEF63123.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
LuxR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_66144_25
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

30423..33410
DNA (2988bp) protein (996aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAT9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF63124.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_66144_26
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

33485..34363
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAU0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF63125.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_66144_27
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(34500..34832)
DNA (333bp) protein (111aa)
putative pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96)
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL35_9BACT
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
berkeley_reactor_200306_planktonic_scaffold_66144_28
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

35033..37933
DNA (2901bp) protein (967aa)
2-oxoglutarate dehydrogenase, E1 subunit {ECO:0000313|EMBL:EEF58764.1}; EC=1.2.4.2 {ECO:0000313|EMBL:EEF58764.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
2-oxoglutarate dehydrogenase, E1 subunit n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMW8_9BACT
2-oxoglutarate dehydrogenase, E1 subunit
berkeley_reactor_200306_planktonic_scaffold_66144_29
Marinithermus hydrothermalis, Marinithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

37952..39187
DNA (1236bp) protein (412aa)
2-oxoglutarate dehydrogenase E2 (EC:2.3.1.61)
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; EC=2.3.1.61;; 2-oxoglutarate dehydrogenase complex component E2 {ECO:0000256|RuleBase:RU361138}; TaxID=869210 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Marinithermus.;" source="Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1).;"
2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase n=1 Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NR09_MARHT
berkeley_reactor_200306_planktonic_scaffold_66144_30
Paenibacillus curdlanolyticus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(39419..43828)
DNA (4410bp) protein (1470aa)
S-layer domain protein n=1 Tax=Paenibacillus curdlanolyticus YK9 RepID=E0I873_9BACL
S-layer domain protein {ECO:0000313|EMBL:EFM11378.1}; TaxID=717606 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus curdlanolyticus YK9.;"
carbohydrate binding family 6
Displaying items 1-30 of 53 in total

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