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berkeley_reactor_200306_planktonic_scaffold_136582

Search features with annotation key words

Displaying items 1-30 of 128 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_136582_1
unknown

Not on your lists

comp(3..74)
DNA (72bp) protein (24aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_136582_2
Paenibacillus sp. JCM 10914, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(178..1233)
DNA (1056bp) protein (352aa)
Zinc-type alcohol dehydrogenase YcjQ n=1 Tax=Paenibacillus sp. JCM 10914 RepID=V9G782_9BACL
Zinc-type alcohol dehydrogenase YcjQ {ECO:0000313|EMBL:GAE05677.1}; TaxID=1236974 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. JCM 10914.;"
alcohol dehydrogenase zinc-binding domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_136582_3

Not on your lists

comp(1273..2034)
DNA (762bp) protein (254aa)
mucin-desulfating sulfatase (N-acetylglucosamine-6-sulfatase) n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174663C
SGNH hydrolase {ECO:0000313|EMBL:AHC53913.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_136582_4
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(2046..2660)
DNA (615bp) protein (205aa)
Zn-dependent oxidoreductase, NADPH:quinone reductase n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AU57_9BACT
Zn-dependent oxidoreductase, NADPH:quinone reductase {ECO:0000313|EMBL:EIP98548.1}; Flags: Precursor;; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
berkeley_reactor_200306_planktonic_scaffold_136582_5
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(2714..3433)
DNA (720bp) protein (240aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IUK9_9BACT
N-terminal cleavage protein
N-terminal cleavage protein {ECO:0000313|EMBL:AHF91283.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_136582_6
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(3430..5982)
DNA (2553bp) protein (851aa)
Beta-1,4-xylanase n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AU41_9BACT
Beta-1,4-xylanase {ECO:0000313|EMBL:EIP98532.1}; Flags: Precursor;; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
beta-1,4-xylanase
berkeley_reactor_200306_planktonic_scaffold_136582_7
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(6388..7200)
DNA (813bp) protein (271aa)
PEP-CTERM putative exosortase interaction domain-containing protein n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AU35_9BACT
PEP-CTERM putative exosortase interaction domain-containing protein {ECO:0000313|EMBL:EIP98526.1}; Flags: Precursor;; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
berkeley_reactor_200306_planktonic_scaffold_136582_8
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

7473..9011
DNA (1539bp) protein (513aa)
hypothetical protein n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B3B51C
hypothetical protein
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_planktonic_scaffold_136582_9
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(9025..9990)
DNA (966bp) protein (322aa)
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AS86_9BACT
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain {ECO:0000313|EMBL:EIP97877.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
AraC family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_136582_10
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

10057..12393
DNA (2337bp) protein (779aa)
Beta-galactosidase/beta-glucuronidase (EC:3.2.1.25)
Putative uncharacterized protein id=3224452 bin=GWF2_Lentisphaerae_52_8 species=Dysgonomonas gadei genus=Dysgonomonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_planktonic_scaffold_136582_11
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

12390..13022
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Spirochaeta alkalica RepID=UPI00035CF1FB
sugar isomerase
Sugar isomerase (SIS) {ECO:0000313|EMBL:AEE97197.1}; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
berkeley_reactor_200306_planktonic_scaffold_136582_12
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

13019..13924
DNA (906bp) protein (302aa)
glk; putative glucokinase (EC:2.7.1.2)
Putative glucokinase id=4196363 bin=GWF2_Lentisphaerae_49_21 species=Phycisphaera mikurensis genus=Phycisphaera taxon_order=Phycisphaerales taxon_class=Phycisphaerae phylum=Planctomycetes tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
Tax=GWF2_Lentisphaerae_49_21_curated
berkeley_reactor_200306_planktonic_scaffold_136582_13
unknown

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14647..15003
DNA (357bp) protein (119aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_136582_14
unknown

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comp(14987..16261)
DNA (1275bp) protein (425aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_136582_15

Not on your lists

comp(16789..17634)
DNA (846bp) protein (282aa)
metallophosphoesterase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5121
Marine sediment metagenome DNA, contig: S01H1_S40665 {ECO:0000313|EMBL:GAG45684.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
metallophosphoesterase
berkeley_reactor_200306_planktonic_scaffold_136582_16
GWC2_Nitrospirae_42_7_curated, Nitrospirae, Bacteria

Not on your lists

comp(17642..18868)
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746456
hypothetical protein
Tax=GWC2_Nitrospirae_42_7_curated
berkeley_reactor_200306_planktonic_scaffold_136582_17
unknown

Not on your lists

comp(18865..20010)
DNA (1146bp) protein (382aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_136582_18
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20053..21519)
DNA (1467bp) protein (489aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1333854 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes OT 69.;"
Sensor histidine kinase n=1 Tax=Pseudomonas alcaligenes OT 69 RepID=U3HLJ7_PSEAC
creC; sensory histidine kinase CreC
berkeley_reactor_200306_planktonic_scaffold_136582_19
GWC2_Nitrospirae_42_7_curated, Nitrospirae, Bacteria

Not on your lists

comp(21516..22169)
DNA (654bp) protein (218aa)
Two component transcriptional regulator, winged helix family id=4535926 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
two component transcriptional regulator, winged helix family
Tax=GWC2_Nitrospirae_42_7_curated
berkeley_reactor_200306_planktonic_scaffold_136582_20
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(22179..22502)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PCJ5_9ZZZZ
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_136582_21
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

22546..23541
DNA (996bp) protein (332aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036FA1CF
Uncharacterized protein {ECO:0000313|EMBL:CCG91943.1}; TaxID=1156937 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.;" source="Methylacidiphilum fumariolicum SolV.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_136582_22
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(23551..24252)
DNA (702bp) protein (234aa)
Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Ubiquinone/menaquinone biosynthesis methyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D058_9BACT
ubiquinone/menaquinone biosynthesis methyltransferase
berkeley_reactor_200306_planktonic_scaffold_136582_trna_4
unknown

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comp(24303..24384)
DNA (82bp)
transferRNA Leu
berkeley_reactor_200306_planktonic_scaffold_136582_23
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

24467..25675
DNA (1209bp) protein (403aa)
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LFR5_SYNFM
PpiC-type peptidyl-prolyl cis-trans isomerase
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_136582_24
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

25679..26656
DNA (978bp) protein (326aa)
6-phosphogluconate dehydrogenase NAD-binding n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7T4_9BACT
6-phosphogluconate dehydrogenase NAD-binding {ECO:0000313|EMBL:EDY17457.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
6-phosphogluconate dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_136582_25
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

26658..27506
DNA (849bp) protein (283aa)
Folate-binding protein YgfZ n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7T5_9BACT
Folate-binding protein YgfZ {ECO:0000313|EMBL:EDY17458.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
aminomethyltransferase
berkeley_reactor_200306_planktonic_scaffold_136582_26
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

27503..28105
DNA (603bp) protein (201aa)
Peptidyl-prolyl cis-trans isomerase cyclophilin type n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7T6_9BACT
cyclophilin type peptidyl-prolyl cis-trans isomerase
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
berkeley_reactor_200306_planktonic_scaffold_136582_trna_1
unknown

Not on your lists

28135..28217
DNA (83bp)
transferRNA Tyr
berkeley_reactor_200306_planktonic_scaffold_136582_27
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(29416..30165)
DNA (750bp) protein (250aa)
alpha-dehydro-beta-deoxy-D-glucarate aldolase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017446D6
alpha-dehydro-beta-deoxy-D-glucarate aldolase
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_planktonic_scaffold_136582_28
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(30162..31160)
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017446D5
hypothetical protein
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
Displaying items 1-30 of 128 in total

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