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berkeley_reactor_200306_planktonic_scaffold_44586

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Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_44586_1
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..403)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3ASH4_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KIC60305.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_44586_2
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(512..1609)
DNA (1098bp) protein (366aa)
Folate-binding protein YgfZ n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E5Z7_9MICO
Folate-binding protein YgfZ {ECO:0000313|EMBL:EIC07594.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
aminomethyltransferase
berkeley_reactor_200306_planktonic_scaffold_44586_3
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1617..2222)
DNA (606bp) protein (202aa)
UPF0678 fatty acid-binding protein-like protein HMPREF1529_01698 n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AEH9_9MICO
UPF0678 fatty acid-binding protein-like protein HMPREF1529_01698 {ECO:0000256|HAMAP-Rule:MF_01297}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_44586_4
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2228..2341)
DNA (114bp) protein (38aa)
Uncharacterized protein n=2 Tax=Microbacterium RepID=H8E5Z9_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EIC07596.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_44586_5
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2357..2644)
DNA (288bp) protein (96aa)
Uncharacterized protein n=2 Tax=Microbacterium RepID=H8E600_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EIC07597.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_44586_6
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2769..3467
DNA (699bp) protein (233aa)
Transcriptional regulator domain-containing protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E601_9MICO
Transcriptional regulator domain-containing protein {ECO:0000313|EMBL:EIC07598.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
glnR; response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
berkeley_reactor_200306_planktonic_scaffold_44586_7
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3537..5705
DNA (2169bp) protein (723aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
Polyphosphate kinase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E602_9MICO
ppk; polyphosphate kinase
berkeley_reactor_200306_planktonic_scaffold_44586_8
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5702..6640
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AEH3_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD85080.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
NTP pyrophosphohydrolase including oxidative damage repair enzyme
berkeley_reactor_200306_planktonic_scaffold_44586_9
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6644..7186
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3B8Y5_9MICO
Chemotaxis protein CheY {ECO:0000313|EMBL:KIC60038.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
berkeley_reactor_200306_planktonic_scaffold_44586_10
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7331..8632)
DNA (1302bp) protein (434aa)
Peptidase M1 membrane alanine aminopeptidase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E605_9MICO
Peptidase M1 membrane alanine aminopeptidase {ECO:0000313|EMBL:EIC07602.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
aminopeptidase N
berkeley_reactor_200306_planktonic_scaffold_44586_11
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8629..12558)
DNA (3930bp) protein (1310aa)
Non-ribosomal peptide synthetase domain protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E606_9MICO
Non-ribosomal peptide synthetase domain protein {ECO:0000313|EMBL:EIC07603.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
non-ribosomal peptide synthetase modules
berkeley_reactor_200306_planktonic_scaffold_44586_12
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12560..13198)
DNA (639bp) protein (213aa)
Mucin-associated surface protein (MASP) n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E607_9MICO
Mucin-associated surface protein (MASP) {ECO:0000313|EMBL:EIC07604.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
TolA protein
berkeley_reactor_200306_planktonic_scaffold_44586_13
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13382..14509
DNA (1128bp) protein (376aa)
Phosphate-binding protein PstS n=2 Tax=Microbacterium RepID=H8E608_9MICO
Phosphate-binding protein PstS {ECO:0000256|PIRNR:PIRNR002756}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
phosphate ABC transporter periplasmic protein
berkeley_reactor_200306_planktonic_scaffold_44586_14
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14681..15682
DNA (1002bp) protein (334aa)
Phosphate ABC transporter, inner membrane subunit PstC n=2 Tax=Microbacterium RepID=H8E609_9MICO
Phosphate ABC transporter, permease PstC {ECO:0000313|EMBL:EPD85074.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
pstC; phosphate ABC transporter permease
berkeley_reactor_200306_planktonic_scaffold_44586_15
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15679..16779
DNA (1101bp) protein (367aa)
Phosphate ABC transporter, permease PstA n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A7F2_9MICO
Phosphate ABC transporter permease {ECO:0000313|EMBL:EXJ52329.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
pstA; phosphate ABC transporter permease
berkeley_reactor_200306_planktonic_scaffold_44586_16
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16795..17574
DNA (780bp) protein (260aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
Phosphate ABC transporter, ATPase subunit n=2 Tax=Microbacterium RepID=H8E611_9MICO
phosphate ABC transporter ATPase
berkeley_reactor_200306_planktonic_scaffold_44586_17
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18252..19064
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E612_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EIC07609.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_44586_18
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19467..20351)
DNA (885bp) protein (295aa)
Aminotransferase class IV n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E613_9MICO
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:KIC60030.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
berkeley_reactor_200306_planktonic_scaffold_44586_19
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20596..21234)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3B8X2_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD85069.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
DNA-directed RNA polymerase, beta subunit/140 kD subunit
berkeley_reactor_200306_planktonic_scaffold_44586_20
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21296..22120)
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A7E8_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EXJ52382.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_44586_21
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22117..22716)
DNA (600bp) protein (200aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3ASF4_9MICO
RNA polymerase sigma factor SigK {ECO:0000313|EMBL:KIC60028.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
berkeley_reactor_200306_planktonic_scaffold_44586_22
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23049..23711
DNA (663bp) protein (221aa)
Beta-Ig-H3/fasciclin n=2 Tax=Microbacterium RepID=H8E617_9MICO
Fasciclin {ECO:0000313|EMBL:KIC60302.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
beta-Ig-H3/fasciclin
berkeley_reactor_200306_planktonic_scaffold_44586_trna_1
unknown

Not on your lists

23812..23884
DNA (73bp)
transferRNA Lys
berkeley_reactor_200306_planktonic_scaffold_44586_23
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23949..25145
DNA (1197bp) protein (399aa)
Serine/threonine protein kinase-related protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E618_9MICO
Serine/threonine protein kinase-related protein {ECO:0000313|EMBL:EIC07615.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
serine/threonine protein kinase
berkeley_reactor_200306_planktonic_scaffold_44586_24
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25176..25919)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3B8W6_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EXJ52381.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
PPE-repeat proteins
berkeley_reactor_200306_planktonic_scaffold_44586_25
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25916..26500)
DNA (585bp) protein (195aa)
Isochorismatase hydrolase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E620_9MICO
Amidase {ECO:0000313|EMBL:KIC60022.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
amidase
berkeley_reactor_200306_planktonic_scaffold_44586_26
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26546..28828)
DNA (2283bp) protein (761aa)
MMPL domain protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E621_9MICO
MMPL domain protein {ECO:0000313|EMBL:EIC07618.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
drug exporters of the RND superfamily
berkeley_reactor_200306_planktonic_scaffold_44586_27
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28891..29286)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A978_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EXJ52380.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
leucyl-tRNA synthetase
berkeley_reactor_200306_planktonic_scaffold_44586_trna_3
unknown

Not on your lists

comp(29316..29388)
DNA (73bp)
transferRNA Thr
berkeley_reactor_200306_planktonic_scaffold_44586_28
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29632..30525
DNA (894bp) protein (298aa)
YaeC family lipoprotein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AEF6_9MICO
Methionine ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIC60019.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
methionine ABC transporter substrate-binding protein
Displaying items 1-30 of 65 in total

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