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berkeley_reactor_200306_planktonic_scaffold_340111

Search features with annotation key words

Displaying items 121-150 of 217 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_340111_119
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

118856..119851
DNA (996bp) protein (332aa)
Cytochrome oxidase assembly n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E2T4_9MICO
Cytochrome oxidase assembly {ECO:0000313|EMBL:EIC08814.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_340111_120
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

119936..120331
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A359_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EXJ50662.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
berkeley_reactor_200306_planktonic_scaffold_340111_121
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(120435..121361)
DNA (927bp) protein (309aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
Protoheme IX farnesyltransferase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E2T2_9MICO
ctaB; polyprenyltransferase
berkeley_reactor_200306_planktonic_scaffold_340111_122
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

121584..123701
DNA (2118bp) protein (706aa)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
Transketolase n=2 Tax=Microbacterium RepID=H8E2T1_9MICO
tktA1; transketolase
berkeley_reactor_200306_planktonic_scaffold_340111_123
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

123698..124828
DNA (1131bp) protein (377aa)
Transaldolase {ECO:0000256|HAMAP-Rule:MF_00493, ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00493, ECO:0000256|SAAS:SAAS00118670};; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
Transaldolase n=2 Tax=Microbacterium RepID=H8E2T0_9MICO
tal2; transaldolase
berkeley_reactor_200306_planktonic_scaffold_340111_124
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

124825..126444
DNA (1620bp) protein (540aa)
Glucose-6-phosphate isomerase {ECO:0000256|RuleBase:RU000612, ECO:0000256|SAAS:SAAS00115780}; EC=5.3.1.9 {ECO:0000256|RuleBase:RU000612, ECO:0000256|SAAS:SAAS00115780};; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
Glucose-6-phosphate isomerase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AMV3_9MICO
pgiA; glucose-6-phosphate isomerase
berkeley_reactor_200306_planktonic_scaffold_340111_125
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

126472..128022
DNA (1551bp) protein (517aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A362_9MICO
zwf; glucose-6-phosphate 1-dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_340111_126
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

128019..128960
DNA (942bp) protein (314aa)
Glucose-6-phosphate dehydrogenase assembly protein OpcA n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3B4K2_9MICO
OpcA protein {ECO:0000313|EMBL:KIC57462.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
opcA; glucose-6-P dehydrogenase subunit
berkeley_reactor_200306_planktonic_scaffold_340111_127
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

128969..129748
DNA (780bp) protein (260aa)
6-phosphogluconolactonase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AA91_9MICO
6-phosphogluconolactonase {ECO:0000313|EMBL:EPD83515.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase
berkeley_reactor_200306_planktonic_scaffold_340111_128
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(129795..130151)
DNA (357bp) protein (119aa)
RNA polymerase-binding protein RbpA n=2 Tax=Microbacterium RepID=H8E2S5_9MICO
RNA polymerase-binding protein RbpA {ECO:0000256|HAMAP-Rule:MF_01483}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
electron transport protein
berkeley_reactor_200306_planktonic_scaffold_340111_129
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(130151..130399)
DNA (249bp) protein (83aa)
Preprotein translocase, SecG subunit n=2 Tax=Microbacterium RepID=H8E2S4_9MICO
Preprotein translocase subunit SecG {ECO:0000313|EMBL:EXJ51684.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
secG; preprotein translocase subunit SecG
berkeley_reactor_200306_planktonic_scaffold_340111_130
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(130570..131364)
DNA (795bp) protein (265aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
Triosephosphate isomerase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E2S3_9MICO
tpiA; triosephosphate isomerase
berkeley_reactor_200306_planktonic_scaffold_340111_131
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(131352..132569)
DNA (1218bp) protein (406aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
Phosphoglycerate kinase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3B4K8_9MICO
pgk; 3-phosphoglycerate kinase
berkeley_reactor_200306_planktonic_scaffold_340111_132
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(132579..133589)
DNA (1011bp) protein (337aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
Glyceraldehyde-3-phosphate dehydrogenase, type I n=2 Tax=Microbacterium RepID=H8E2S1_9MICO
gap; glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_340111_133
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(133729..134358)
DNA (630bp) protein (210aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
Superoxide dismutase (EC:1.15.1.1)
Superoxide dismutase n=2 Tax=Microbacterium RepID=H8E2S0_9MICO
berkeley_reactor_200306_planktonic_scaffold_340111_134
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(134503..135480)
DNA (978bp) protein (326aa)
Putative sporulation transcription regulator WhiA n=2 Tax=Microbacterium RepID=H8E2R9_9MICO
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_340111_135
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(135520..136395)
DNA (876bp) protein (292aa)
UPF0042 nucleotide-binding protein OR221_1146 n=2 Tax=Microbacterium RepID=H8E2R8_9MICO
Nucleotide-binding protein OR221_1146 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
P-loop-containing kinase
berkeley_reactor_200306_planktonic_scaffold_340111_136
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(136442..138361)
DNA (1920bp) protein (640aa)
UvrABC system protein C n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3B4L2_9MICO
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
uvrC; nuclease subunit of the excinuclease complex
berkeley_reactor_200306_planktonic_scaffold_340111_137
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(138363..141281)
DNA (2919bp) protein (973aa)
UvrABC system protein A n=2 Tax=Microbacterium RepID=H8E2R6_9MICO
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
uvrA; excinuclease ATPase subunit
berkeley_reactor_200306_planktonic_scaffold_340111_138
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(141343..141780)
DNA (438bp) protein (146aa)
Regulatory protein MarR n=2 Tax=Microbacterium RepID=H8E2R5_9MICO
Regulatory protein MarR {ECO:0000313|EMBL:EIC08795.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_340111_139
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

141819..142055
DNA (237bp) protein (79aa)
Rhs family protein n=2 Tax=Microbacterium RepID=H8E2R4_9MICO
Rhs family protein {ECO:0000313|EMBL:EIC08794.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
Rhs family protein
berkeley_reactor_200306_planktonic_scaffold_340111_140
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(142090..143553)
DNA (1464bp) protein (488aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.7 {ECO:0000256|HAMAP-Rule:MF_00208};; L-lysine-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A375_9MICO
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
berkeley_reactor_200306_planktonic_scaffold_340111_141
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(143768..145837)
DNA (2070bp) protein (690aa)
UvrABC system protein B n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3B4L6_9MICO
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
uvrB; helicase subunit of the DNA excision repair complex
berkeley_reactor_200306_planktonic_scaffold_340111_142
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

145929..146543
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AAA5_9MICO
Membrane protein {ECO:0000313|EMBL:EXJ51697.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_340111_143
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(146554..147168)
DNA (615bp) protein (205aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
Dephospho-CoA kinase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E2R0_9MICO
dephospho-CoA kinase
berkeley_reactor_200306_planktonic_scaffold_340111_144
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(147171..148361)
DNA (1191bp) protein (397aa)
Diguanylate cyclase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E2Q9_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EXJ51699.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
diguanylate cyclase (GGDEF) domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_340111_145
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(148358..150043)
DNA (1686bp) protein (562aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
PAS sensor protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E2Q8_9MICO
signal transduction histidine kinase
berkeley_reactor_200306_planktonic_scaffold_340111_146
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(150148..151599)
DNA (1452bp) protein (484aa)
30S ribosomal protein S1 n=2 Tax=Microbacterium RepID=H8E2Q7_9MICO
30S ribosomal protein S1 {ECO:0000313|EMBL:EXJ51701.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
rpsA; 30S ribosomal protein S1
berkeley_reactor_200306_planktonic_scaffold_340111_147
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(151794..152807)
DNA (1014bp) protein (338aa)
Cation diffusion facilitator family transporter n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AAA9_9MICO
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:EXJ51702.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
cation efflux protein
berkeley_reactor_200306_planktonic_scaffold_340111_148
Gordonia namibiensis, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(152810..153250)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00035F26C7
UPF0225 protein GONAM_27_00410 {ECO:0000256|HAMAP-Rule:MF_00612}; TaxID=1208314 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia namibiensis NBRC 108229.;"
hypothetical protein
Displaying items 121-150 of 217 in total

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