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ALUMROCK_MS4_Beggiotoa_37_524_curated

ALUMROCK_MS4_Thiotrichales_37_1
In projects: ALUMROCK_MS4  |  alumrock-genomes

Consensus taxonomy: Thiotrichales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: ALUMROCK_MS4_Beggiotoa_37_524 Manually curated genome
Original version: ALUMROCK_MS4_Beggiotoa_37_524

Properties

Avg. coverage: 1.00 Longest contig: 99.60 Kbp Bin length: 3.91 Mbp GC content: 36.77 %
Contigs count: 288 Features count: 3554 rRNAs count: 1 tRNAs count: 44

Genome completeness

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Displaying items 101-150 of 288 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
ar4r2_scaffold_2462
Order: Thiotrichales (64.29%)
14 13782 bp 36.50 1.00 75.55
ar4r2_scaffold_4308
Order: Thiotrichales (61.54%)
13 13710 bp 35.53 1.00 70.04
ar4r2_scaffold_2063
Class: Gammaproteobacteria (50%)
12 13634 bp 35.76 1.00 84.47
ar4r2_scaffold_1868
Order: Thiotrichales (92.31%)
13 13626 bp 37.23 1.00 87.05
ar4r2_scaffold_3097
Phylum: Proteobacteria (90.91%)
11 13617 bp 37.12 1.00 89.69
ar4r2_scaffold_3450
Species: Thioploca ingrica (50%)
8 13552 bp 36.25 1.00 84.83
ar4r2_scaffold_1914
Order: Thiotrichales (75%)
16 13342 bp 37.39 1.00 89.15
ar4r2_scaffold_3961
Phylum: Proteobacteria (88.89%)
9 13167 bp 39.16 1.00 89.47
ar4r2_scaffold_3756
Order: Thiotrichales (50%)
14 13060 bp 36.19 1.00 80.63
ar4r2_scaffold_1916
Order: Thiotrichales (80%)
15 13038 bp 36.81 1.00 86.49
ar4r2_scaffold_2077
Order: Thiotrichales (50%)
10 13002 bp 37.96 1.00 95.32
ar4r2_scaffold_2179
Order: Thiotrichales (75%)
16 12517 bp 37.50 1.00 83.45
ar4r2_scaffold_2111
Phylum: Proteobacteria (53.85%)
13 12509 bp 38.42 1.00 84.90
ar4r2_scaffold_3908
Genus: Beggiatoa (50%)
10 12462 bp 35.93 1.00 86.59
ar4r2_scaffold_1985
Order: Thiotrichales (60%)
15 12448 bp 36.07 1.00 88.35
ar4r2_scaffold_4406
Species: Candidatus Thiomargarita nelsonii (60%)
10 12396 bp 37.54 1.00 90.78
ar4r2_scaffold_2818
Order: Thiotrichales (76.92%)
13 12284 bp 36.09 1.00 82.55
ar4r2_scaffold_2112
Order: Thiotrichales (63.64%)
11 12200 bp 36.05 1.00 88.33
ar4r2_scaffold_2163
Order: Thiotrichales (50%)
6 12121 bp 37.84 1.00 90.29
ar4r2_scaffold_3580
Order: Thiotrichales (60%)
10 12065 bp 36.10 1.00 88.35
ar4r2_scaffold_2208 15 11839 bp 33.91 1.00 91.65
ar4r2_scaffold_2285
Order: Thiotrichales (90.91%)
11 11752 bp 38.20 1.00 82.61
ar4r2_scaffold_2226
Order: Thiotrichales (80%)
5 11531 bp 37.22 1.00 86.25
ar4r2_scaffold_4257
Genus: Beggiatoa (50%)
12 11493 bp 36.20 1.00 76.82
ar4r2_scaffold_2344
Order: Thiotrichales (72.73%)
11 11457 bp 35.22 1.00 91.02
ar4r2_scaffold_2466
Order: Thiotrichales (77.78%)
9 11399 bp 36.56 1.00 85.74
ar4r2_scaffold_2266
Order: Thiotrichales (50%)
8 11352 bp 35.74 1.00 91.89
ar4r2_scaffold_3853
Order: Thiotrichales (66.67%)
12 11300 bp 37.32 1.00 90.58
ar4r2_scaffold_4235
Order: Thiotrichales (75%)
8 11146 bp 36.37 1.00 84.00
ar4r2_scaffold_5166
Order: Thiotrichales (60%)
10 10974 bp 36.87 1.00 89.07
ar4r2_scaffold_2554
Species: Thioploca ingrica (61.54%)
13 10930 bp 37.15 1.00 82.45
ar4r2_scaffold_6653
Order: Thiotrichales (50%)
12 10797 bp 38.97 1.00 83.75
ar4r2_scaffold_2570
Order: Thiotrichales (63.64%)
11 10784 bp 37.97 1.00 89.13
ar4r2_scaffold_4131
Class: Gammaproteobacteria (50%)
8 10688 bp 35.79 1.00 84.60
ar4r2_scaffold_2444
Order: Thiotrichales (58.33%)
12 10675 bp 36.32 1.00 91.17
ar4r2_scaffold_2735
Order: Thiotrichales (58.33%)
12 10670 bp 37.50 1.00 79.33
ar4r2_scaffold_2637
Order: Thiotrichales (60%)
5 10490 bp 37.76 1.00 84.05
ar4r2_scaffold_2505
Genus: Beggiatoa (66.67%)
9 10465 bp 36.45 1.00 76.80
ar4r2_scaffold_2878 6 10166 bp 36.87 1.00 97.65
ar4r2_scaffold_2667
Class: Gammaproteobacteria (61.54%)
13 10153 bp 35.72 1.00 88.88
ar4r2_scaffold_6415
Phylum: Proteobacteria (70%)
10 10141 bp 36.15 1.00 83.69
ar4r2_scaffold_2887
Order: Thiotrichales (55.56%)
9 10003 bp 35.41 1.00 84.87
ar4r2_scaffold_2889
Species: Thioploca ingrica (55.56%)
9 9895 bp 35.83 1.00 80.56
ar4r2_scaffold_2753
Order: Thiotrichales (55.56%)
9 9799 bp 37.20 1.00 87.71
ar4r2_scaffold_3341
Order: Thiotrichales (50%)
8 9720 bp 33.92 1.00 92.90
ar4r2_scaffold_3058
Class: Gammaproteobacteria (55.56%)
9 9711 bp 35.29 1.00 80.38
ar4r2_scaffold_2976
Genus: Beggiatoa (53.85%)
13 9604 bp 36.05 1.00 89.87
ar4r2_scaffold_2978
Order: Thiotrichales (75%)
8 9473 bp 36.68 1.00 78.57
ar4r2_scaffold_2787
Order: Thiotrichales (50%)
10 9467 bp 37.66 1.00 81.54
ar4r2_scaffold_3002
Order: Thiotrichales (90%)
10 9338 bp 34.87 1.00 82.28
Displaying items 101-150 of 288 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.