ggKbase home page
Advanced Search
Search Help

BD02T64_Gammaproteobacteria_43_32_partial

BD02T64_Gammaproteobacteria_43_32
In projects: BD02T64

Consensus taxonomy: Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: BD02T64_UNK

Properties

Avg. coverage: 31.56 Longest contig: 143.32 Kbp Bin length: 5.49 Mbp GC content: 42.91 %
Contigs count: 205 Features count: 4776 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 24 / 55 MC: 2 BSCG 26 / 51 MC: 3 ASCG 11 / 38 MC: 2
Displaying items 1-50 of 205 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
BD02T64_scaffold_608
Class: Gammaproteobacteria (70.77%)
130 137423 bp 42.25 32.27 85.97
BD02T64_scaffold_236
Class: Gammaproteobacteria (72.5%)
120 124710 bp 42.93 32.01 89.68
BD02T64_scaffold_273
Class: Gammaproteobacteria (66.98%)
106 143319 bp 42.94 31.35 90.95
BD02T64_scaffold_227
Class: Gammaproteobacteria (65.91%)
88 98799 bp 44.27 29.61 85.65
BD02T64_scaffold_384
Class: Gammaproteobacteria (76.92%)
78 102588 bp 42.04 30.78 92.76
BD02T64_scaffold_292
Class: Gammaproteobacteria (80.82%)
73 79217 bp 43.37 32.09 88.30
BD02T64_scaffold_364
Class: Gammaproteobacteria (57.75%)
71 80844 bp 41.93 32.43 86.18
BD02T64_scaffold_1111
Class: Gammaproteobacteria (84.06%)
69 72558 bp 42.94 32.33 89.67
BD02T64_scaffold_468
Class: Gammaproteobacteria (59.09%)
66 77943 bp 42.57 31.42 84.70
BD02T64_scaffold_305
Class: Gammaproteobacteria (79.69%)
64 76564 bp 42.88 31.83 89.99
BD02T64_scaffold_365
Class: Gammaproteobacteria (87.1%)
62 67434 bp 43.07 32.30 91.13
BD02T64_scaffold_484
Class: Gammaproteobacteria (77.05%)
61 76059 bp 42.77 32.84 89.10
BD02T64_scaffold_255
Class: Gammaproteobacteria (66.67%)
60 87410 bp 42.61 32.63 86.95
BD02T64_scaffold_366
Class: Gammaproteobacteria (96.67%)
60 67327 bp 43.38 32.46 89.92
BD02T64_scaffold_1358
Class: Gammaproteobacteria (60.34%)
58 53433 bp 41.73 31.46 80.79
BD02T64_scaffold_347
Class: Gammaproteobacteria (59.65%)
57 70118 bp 42.80 33.01 87.68
BD02T64_scaffold_351
Phylum: Proteobacteria (63.16%)
57 69572 bp 41.14 29.00 86.77
BD02T64_scaffold_477
Class: Gammaproteobacteria (76.79%)
56 58195 bp 42.71 29.72 85.68
BD02T64_scaffold_734
Class: Gammaproteobacteria (94.34%)
53 53922 bp 42.14 33.34 93.53
BD02T64_scaffold_421
Class: Gammaproteobacteria (58.49%)
53 82076 bp 43.53 29.40 90.08
BD02T64_scaffold_856
Class: Gammaproteobacteria (79.17%)
48 57214 bp 42.67 32.02 91.25
BD02T64_scaffold_640
Phylum: Proteobacteria (77.08%)
48 62881 bp 42.52 31.39 93.53
BD02T64_scaffold_906
Class: Gammaproteobacteria (70.83%)
48 58346 bp 41.65 34.21 91.68
BD02T64_scaffold_678
Class: Gammaproteobacteria (85.42%)
48 58886 bp 43.01 32.06 88.22
BD02T64_scaffold_1456
Class: Gammaproteobacteria (59.57%)
47 63773 bp 42.64 30.65 85.83
BD02T64_scaffold_815
Class: Gammaproteobacteria (78.72%)
47 41707 bp 43.62 30.24 93.57
BD02T64_scaffold_452
Class: Gammaproteobacteria (87%)
46 60202 bp 44.44 32.07 92.85
BD02T64_scaffold_709
Class: Gammaproteobacteria (58.7%)
46 45003 bp 43.29 32.33 85.88
BD02T64_scaffold_362
Class: Gammaproteobacteria (65.22%)
46 67684 bp 42.99 29.69 92.35
BD02T64_scaffold_953
Class: Gammaproteobacteria (74.42%)
43 44267 bp 40.74 34.41 89.38
BD02T64_scaffold_583
Class: Gammaproteobacteria (81.4%)
43 51258 bp 43.66 31.89 92.20
BD02T64_scaffold_620
Class: Gammaproteobacteria (76.74%)
43 56273 bp 42.88 32.46 91.69
BD02T64_scaffold_835
Class: Gammaproteobacteria (76.19%)
42 41321 bp 42.55 31.72 88.67
BD02T64_scaffold_850
Class: Gammaproteobacteria (95.24%)
42 40781 bp 43.49 32.13 88.96
BD02T64_scaffold_746
Class: Gammaproteobacteria (70.73%)
41 43674 bp 43.52 31.80 89.64
BD02T64_scaffold_882
Class: Gammaproteobacteria (74.36%)
39 39903 bp 43.62 32.63 90.48
BD02T64_scaffold_1061
Class: Gammaproteobacteria (53.85%)
39 42253 bp 41.48 32.66 90.70
BD02T64_scaffold_951
Class: Gammaproteobacteria (68.42%)
38 38039 bp 42.74 32.34 87.88
BD02T64_scaffold_708
Class: Gammaproteobacteria (78.95%)
38 45051 bp 43.24 29.05 93.24
BD02T64_scaffold_909
Class: Gammaproteobacteria (76.32%)
38 39112 bp 42.83 32.45 84.51
BD02T64_scaffold_1158
Class: Gammaproteobacteria (91.89%)
37 40954 bp 44.04 31.25 90.60
BD02T64_scaffold_2239
Class: Gammaproteobacteria (66.67%)
36 31391 bp 42.88 30.43 85.25
BD02T64_scaffold_1169
Class: Gammaproteobacteria (61.11%)
36 42445 bp 41.35 32.09 89.74
BD02T64_scaffold_996
Class: Gammaproteobacteria (65.71%)
35 36883 bp 42.01 30.35 86.06
BD02T64_scaffold_1004
Class: Gammaproteobacteria (85.71%)
35 36603 bp 42.90 31.05 92.30
BD02T64_scaffold_875
Class: Gammaproteobacteria (68.57%)
35 40119 bp 43.03 32.13 91.85
BD02T64_scaffold_736
Class: Gammaproteobacteria (58.82%)
34 44208 bp 46.42 27.50 84.38
BD02T64_scaffold_2163
Class: Gammaproteobacteria (70.59%)
34 37211 bp 43.52 30.84 89.30
BD02T64_scaffold_1430
Class: Gammaproteobacteria (72.73%)
33 37906 bp 42.65 32.41 88.95
BD02T64_scaffold_1394
Class: Gammaproteobacteria (56.25%)
32 28567 bp 42.05 31.42 74.70
Displaying items 1-50 of 205 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.