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CN-SCN_Erythrobacter_14x

CN-SCN_Sphingomonadales_62_14
In projects: CN-SCN  |  SCN_92

Consensus taxonomy: Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 13.72 Longest contig: 128.95 Kbp Bin length: 2.80 Mbp GC content: 61.96 %
Contigs count: 136 Features count: 2751 rRNAs count: 0 tRNAs count: 36

Genome completeness

partial RP 39 / 55 BSCG 38 / 51 MC: 2 ASCG 12 / 38 MC: 1

Description

Partial 38

Displaying items 1-50 of 136 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_9890 ERY14_132
Order: Sphingomonadales (100%)
5 6385 bp 60.58 13.61 59.34
cn_combo_scaffold_8793 ERY14_117
Phylum: Proteobacteria (57.14%)
7 7151 bp 59.70 9.91 77.15
cn_combo_scaffold_5791 ERY14_110
Species: uncultured bacterium pAKD4 (72.73%)
11 10329 bp 61.51 12.24 80.80
cn_combo_scaffold_8258 ERY14_88
Order: Sphingomonadales (81.82%)
11 7552 bp 60.51 13.45 81.16
cn_combo_scaffold_5394 ERY14_129
Order: Sphingomonadales (71.43%)
14 10997 bp 58.29 13.80 82.56
cn_combo_scaffold_3751 ERY14_127
Order: Sphingomonadales (76.92%)
13 15402 bp 60.95 13.78 82.59
cn_combo_scaffold_6471 ERY14_113
Order: Sphingomonadales (54.55%)
11 9348 bp 61.92 14.09 82.61
cn_combo_scaffold_15593 ERY14_135
Order: Sphingomonadales (60%)
5 5486 bp 61.96 13.49 82.79
cn_combo_scaffold_4569 ERY14_109 17 12883 bp 61.30 13.58 83.01
cn_combo_scaffold_5475 ERY14_76
Order: Sphingomonadales (66.67%)
12 17355 bp 60.71 13.94 84.44
cn_combo_scaffold_4945 ERY14_70
Order: Sphingomonadales (58.33%)
12 11874 bp 61.65 13.79 85.36
cn_combo_scaffold_1870 ERY14_22
Order: Sphingomonadales (82.35%)
34 29077 bp 60.55 13.09 85.74
cn_combo_scaffold_1748 ERY14_20
Order: Sphingomonadales (89.66%)
29 32733 bp 61.09 13.23 85.77
cn_combo_scaffold_3621 ERY14_126
Order: Sphingomonadales (90%)
10 15883 bp 61.25 13.24 86.38
cn_combo_scaffold_18726 ERY14_105
Species: BJP_IG2102_Porphyrobacter_62_18 (75%)
4 5920 bp 66.20 14.19 86.60
cn_combo_scaffold_12163 ERY14_133
Order: Sphingomonadales (83.33%)
6 5248 bp 60.99 12.48 86.66
cn_combo_scaffold_2637 ERY14_124
Order: Sphingomonadales (86.96%)
23 21193 bp 61.61 14.02 87.45
cn_combo_scaffold_12836 ERY14_103
Species: BJP_08E140C01_10KDA_Sphingomonadales_62_47 (75%)
4 5003 bp 63.50 11.55 87.49
cn_combo_scaffold_5934 ERY14_78
Order: Sphingomonadales (80%)
15 17195 bp 60.22 13.37 87.61
cn_combo_scaffold_2265 ERY14_30
Order: Sphingomonadales (84.62%)
26 24127 bp 61.85 14.56 87.61
cn_combo_scaffold_4969 ERY14_71
Order: Sphingomonadales (84.62%)
13 11821 bp 61.38 13.90 87.76
cn_combo_scaffold_3234 ERY14_48
Order: Sphingomonadales (81.82%)
22 17676 bp 61.76 14.38 87.79
cn_combo_scaffold_4917 ERY14_69
Order: Sphingomonadales (91.67%)
12 11948 bp 61.17 12.76 88.11
cn_combo_scaffold_11910 ERY14_108
Class: Alphaproteobacteria (50%)
4 5352 bp 59.21 13.73 88.12
cn_combo_scaffold_2062 ERY14_26
Order: Sphingomonadales (85.19%)
27 26555 bp 61.59 13.56 88.25
cn_combo_scaffold_2230 ERY14_29
Species: BJP_IG2102_Porphyrobacter_62_18 (56%)
25 24559 bp 61.07 13.53 88.27
cn_combo_scaffold_2888 ERY14_125
Order: Sphingomonadales (84.62%)
26 28024 bp 61.81 14.00 88.69
cn_combo_scaffold_2665 ERY14_38
Order: Sphingomonadales (97.06%)
34 36743 bp 61.84 14.13 88.87
cn_combo_scaffold_3078 ERY14_43
Order: Sphingomonadales (90%)
20 18466 bp 59.93 13.66 88.98
cn_combo_scaffold_2078 ERY14_27
Order: Sphingomonadales (89.29%)
28 26336 bp 62.19 15.06 89.09
cn_combo_scaffold_4909 ERY14_68
Order: Sphingomonadales (92.31%)
13 11977 bp 62.54 13.89 89.21
cn_combo_scaffold_3727 ERY14_53
Order: Sphingomonadales (100%)
22 26986 bp 61.61 14.20 89.28
cn_combo_scaffold_4393 ERY14_60
Order: Sphingomonadales (95%)
20 20410 bp 62.47 14.85 89.37
cn_combo_scaffold_12227 ERY14_100
Order: Sphingomonadales (100%)
5 5223 bp 63.93 12.46 89.37
cn_combo_scaffold_5707 ERY14_77
Species: BJP_IG2102_Porphyrobacter_62_18 (83.33%)
12 10454 bp 64.72 15.46 89.42
cn_combo_scaffold_11244 ERY14_98
Order: Sphingomonadales (100%)
6 5653 bp 61.77 13.11 89.53
cn_combo_scaffold_4820 ERY14_67
Order: Sphingomonadales (63.64%)
11 12218 bp 59.78 12.77 89.57
cn_combo_scaffold_1424 ERY14_13
Order: Sphingomonadales (95.16%)
62 60962 bp 62.61 14.14 89.61
cn_combo_scaffold_2059 ERY14_25
Order: Sphingomonadales (96.15%)
26 26610 bp 62.24 13.69 89.71
cn_combo_scaffold_12273 ERY14_101
Species: BJP_IG2102_Porphyrobacter_62_18 (81.82%)
11 5210 bp 61.21 14.11 89.83
cn_combo_scaffold_3067 ERY14_44
Order: Sphingomonadales (97.56%)
41 33311 bp 62.06 14.68 89.85
cn_combo_scaffold_3864 ERY14_54
Genus: Erythrobacter (50%)
12 15029 bp 62.12 13.75 89.99
cn_combo_scaffold_1297 ERY14_10
Order: Sphingomonadales (76.19%)
42 39088 bp 62.28 13.77 90.10
cn_combo_scaffold_2292 ERY14_121
Order: Sphingomonadales (89.47%)
19 23810 bp 61.73 13.69 90.14
cn_combo_scaffold_8034 ERY14_131
Genus: Novosphingobium (50%)
8 7740 bp 60.87 13.73 90.16
cn_combo_scaffold_1211 ERY14_9
Order: Sphingomonadales (100%)
49 41216 bp 62.89 14.26 90.17
cn_combo_scaffold_1321 ERY14_11
Order: Sphingomonadales (97.22%)
36 38683 bp 63.12 14.14 90.19
cn_combo_scaffold_2551 ERY14_123
Order: Sphingomonadales (80%)
20 21779 bp 59.16 14.08 90.25
cn_combo_scaffold_6635 ERY14_81
Species: BJP_08E140C01_10KDA_Sphingomonadales_62_47 (62.5%)
8 9148 bp 61.82 12.00 90.31
cn_combo_scaffold_2391 ERY14_32
Order: Sphingomonadales (89.47%)
19 22990 bp 61.72 13.75 90.35
Displaying items 1-50 of 136 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.