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CN-SCN_Phenylobacterium_31x

CN-SCN_RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated_70_30
In projects: CN-SCN  |  SCN_92

Consensus taxonomy: R_Phenylobacterium_69_31  →  Caulobacterales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 30.31 Longest contig: 460.76 Kbp Bin length: 4.89 Mbp GC content: 69.52 %
Contigs count: 61 Features count: 4806 rRNAs count: 0 tRNAs count: 39

Genome completeness

near complete RP 52 / 55 MC: 2 BSCG 51 / 51 ASCG 10 / 38

Description

Full 52

Displaying items 1-50 of 61 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_4452 PHE30_49
Species: R_Phenylobacterium_69_31 (55.56%)
9 13187 bp 66.17 31.89 93.84
cn_combo_scaffold_43 PHE30_1
Species: R_Phenylobacterium_69_31 (58.16%)
196 231903 bp 70.51 29.04 93.67
cn_combo_scaffold_1177 PHE30_34
Species: R_Phenylobacterium_69_31 (83.78%)
37 42318 bp 71.14 30.27 93.44
cn_combo_scaffold_532 PHE30_22
Order: Caulobacterales (64.91%)
57 75891 bp 70.66 29.11 93.37
cn_combo_scaffold_958 PHE30_31
Order: Caulobacterales (50%)
52 50374 bp 63.01 30.40 93.18
cn_combo_scaffold_177 PHE30_7
Species: R_Phenylobacterium_69_31 (52.34%)
214 209251 bp 70.20 29.10 93.09
cn_combo_scaffold_436 PHE30_17
Species: R_Phenylobacterium_69_31 (82.03%)
128 120415 bp 70.72 30.27 93.02
cn_combo_scaffold_1555 PHE30_37
Species: R_Phenylobacterium_69_31 (50%)
28 34006 bp 70.76 28.55 92.90
cn_combo_scaffold_188 PHE30_58
Class: Alphaproteobacteria (74.35%)
230 244241 bp 70.16 29.79 92.64
cn_combo_scaffold_634 PHE30_26
Species: R_Phenylobacterium_69_31 (62.93%)
116 120059 bp 69.70 29.73 92.30
cn_combo_scaffold_669 PHE30_27
Species: R_Phenylobacterium_69_31 (67.16%)
67 63374 bp 69.76 30.58 92.19
cn_combo_scaffold_304 PHE30_10
Species: R_Phenylobacterium_69_31 (67.33%)
101 103544 bp 70.56 30.50 92.03
cn_combo_scaffold_342 PHE30_12
Order: Caulobacterales (51.16%)
86 98240 bp 68.65 31.66 91.71
cn_combo_scaffold_95 PHE30_5
Order: Caulobacterales (67.68%)
263 291047 bp 68.88 30.12 91.65
cn_combo_scaffold_386 PHE30_13
Species: R_Phenylobacterium_69_31 (67.68%)
99 92074 bp 70.54 30.57 91.63
cn_combo_scaffold_1161 PHE30_35
Species: R_Phenylobacterium_69_31 (68.54%)
89 74811 bp 69.50 30.25 91.63
cn_combo_scaffold_401 PHE30_14
Order: Caulobacterales (71.91%)
89 88952 bp 69.62 29.38 91.62
cn_combo_scaffold_664 PHE30_25
Order: Caulobacterales (69.57%)
69 63553 bp 70.26 30.12 91.61
cn_combo_scaffold_267 PHE30_8
Species: R_Phenylobacterium_69_31 (68.04%)
97 113533 bp 67.64 29.92 91.53
cn_combo_scaffold_85 PHE30_4
Species: R_Phenylobacterium_69_31 (66.19%)
278 282701 bp 69.77 30.22 91.44
cn_combo_scaffold_98 PHE30_3
Species: R_Phenylobacterium_69_31 (56.41%)
156 174296 bp 69.76 32.05 91.42
cn_combo_scaffold_189 PHE30_6
Species: R_Phenylobacterium_69_31 (73.6%)
125 131696 bp 70.61 31.88 91.40
cn_combo_scaffold_443 PHE30_16
Species: R_Phenylobacterium_69_31 (64.71%)
85 83677 bp 71.16 30.11 91.39
cn_combo_scaffold_696 PHE30_28
Species: R_Phenylobacterium_69_31 (67.86%)
56 62002 bp 69.82 29.50 91.34
cn_combo_scaffold_13 PHE30_2
Species: R_Phenylobacterium_69_31 (58.52%)
446 460761 bp 69.46 31.14 91.33
cn_combo_scaffold_1353 PHE30_59a
Class: Alphaproteobacteria (71.79%)
39 37896 bp 70.02 29.81 91.04
cn_combo_scaffold_1062 PHE30_32
Species: R_Phenylobacterium_69_31 (66.67%)
54 51218 bp 68.23 29.84 90.93
cn_combo_scaffold_280 PHE30_11
Species: R_Phenylobacterium_69_31 (59.67%)
181 191381 bp 69.73 29.62 90.48
cn_combo_scaffold_454 PHE30_19
Species: R_Phenylobacterium_69_31 (56.25%)
96 82500 bp 69.54 30.13 90.35
cn_combo_scaffold_1354 PHE30_36
Species: R_Phenylobacterium_69_31 (64.1%)
39 37880 bp 70.50 31.15 90.29
cn_combo_scaffold_434 PHE30_15
Species: R_Phenylobacterium_69_31 (62.07%)
87 84213 bp 69.41 29.99 90.25
cn_combo_scaffold_8743 PHE30_57
Order: Caulobacterales (52.94%)
17 17094 bp 69.97 22.67 90.17
cn_combo_scaffold_780 PHE30_29
Order: Caulobacterales (68.33%)
60 67299 bp 67.72 31.83 90.15
cn_combo_scaffold_2080 PHE30_41
Species: R_Phenylobacterium_69_31 (86.96%)
23 26318 bp 72.15 29.86 90.10
cn_combo_scaffold_475 PHE30_20
Species: R_Phenylobacterium_69_31 (62.2%)
82 79793 bp 69.47 29.50 89.95
cn_combo_scaffold_437 PHE30_18
Species: R_Phenylobacterium_69_31 (71.64%)
67 84537 bp 69.32 29.30 89.92
cn_combo_scaffold_523 PHE30_21
Species: R_Phenylobacterium_69_31 (62.2%)
82 74993 bp 70.27 29.73 89.78
cn_combo_scaffold_624 PHE30_24
Species: R_Phenylobacterium_69_31 (67.39%)
92 83141 bp 70.53 29.88 89.44
cn_combo_scaffold_5141 PHE30_50
Species: R_Phenylobacterium_69_31 (68.42%)
19 20842 bp 71.88 30.80 88.96
cn_combo_scaffold_1660 PHE30_38
Species: R_Phenylobacterium_69_31 (77.42%)
31 31687 bp 69.56 28.63 88.79
cn_combo_scaffold_1135 PHE30_33
Order: Caulobacterales (87.23%)
47 43047 bp 68.59 30.50 88.66
cn_combo_scaffold_3236 PHE30_46
Species: R_Phenylobacterium_69_31 (100%)
27 23611 bp 66.73 31.54 88.54
cn_combo_scaffold_6082 PHE30_54
Order: Caulobacterales (70.59%)
17 15878 bp 69.60 28.96 88.46
cn_combo_scaffold_5733 PHE30_53
Order: Caulobacterales (77.78%)
9 10415 bp 71.36 33.13 88.31
cn_combo_scaffold_3011 PHE30_45
Order: Caulobacterales (71.88%)
32 29187 bp 71.47 29.32 88.07
cn_combo_scaffold_2323 PHE30_42
Order: Caulobacterales (66.67%)
30 25527 bp 67.50 33.33 87.31
cn_combo_scaffold_293 PHE30_9
Species: R_Phenylobacterium_69_31 (59.81%)
107 106224 bp 69.96 31.74 87.30
cn_combo_scaffold_2372 PHE30_44 45 23122 bp 59.18 31.20 87.05
cn_combo_scaffold_1927 PHE30_40
Species: R_Phenylobacterium_69_31 (65.22%)
46 44269 bp 69.11 30.43 86.88
cn_combo_scaffold_955 PHE30_30
Species: R_Phenylobacterium_69_31 (62%)
50 50674 bp 68.18 29.70 85.98
Displaying items 1-50 of 61 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.