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CN-SCN_Variovorax_85x

CN-SCN_Variovorax_67_87
In projects: CN-SCN

Consensus taxonomy: Variovorax  →  Burkholderiales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Description

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Displaying items 51-61 of 61 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_1132 VAR87_37
Genus: Variovorax (64.81%)
54 56353 bp 66.64 90.27 94.57
cn_combo_scaffold_956 VAR87_35
Genus: Variovorax (85.71%)
49 50469 bp 67.46 88.27 94.95
cn_combo_scaffold_35 VAR87_4
Genus: Variovorax (75.12%)
217 243419 bp 68.45 79.98 94.97
cn_combo_scaffold_4765 VAR87_44
Species: Variovorax paradoxus (58.33%)
12 12342 bp 66.80 84.38 95.21
cn_combo_scaffold_6907 VAR87_48
Class: Betaproteobacteria (88.89%)
9 8840 bp 59.14 20.83 95.57
cn_combo_scaffold_1118 VAR87_58
Order: Burkholderiales (88.1%)
42 43848 bp 68.48 86.10 95.80
cn_combo_scaffold_345 VAR87_21
Genus: Variovorax (54.24%)
59 97115 bp 70.07 86.13 96.48
cn_combo_scaffold_12639 VAR87_54
Species: Variovorax paradoxus (80%)
5 5072 bp 65.24 90.63 96.59
cn_combo_scaffold_2944 VAR87_43
Species: Variovorax paradoxus (50%)
12 19235 bp 68.39 83.20 96.84
cn_combo_scaffold_8771 VAR87_51
Species: Variovorax paradoxus (50%)
4 7406 bp 69.04 87.59 97.34
cn_combo_scaffold_6529 VAR87_45
Species: Variovorax paradoxus (50%)
8 9274 bp 66.42 84.12 99.21
Displaying items 51-61 of 61 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.