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CN-SCN_Xanthomonadaceae_48x

CN-SCN_Xanthomonadales_69_49
In projects: CN-SCN

Consensus taxonomy: Xanthomonadales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 49.15 Longest contig: 56.08 Kbp Bin length: 3.65 Mbp GC content: 68.82 %
Contigs count: 344 Features count: 3771 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 7 / 55 MC: 5 BSCG 10 / 51 MC: 6 ASCG 6 / 38 MC: 3

Description

Partial double 6 and 6

Displaying items 51-100 of 344 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_12522 XAN48_299
Order: Xanthomonadales (80%)
10 6590 bp 68.68 49.54 96.28
cn_combo_scaffold_14664 XAN48_324
Genus: Lysobacter (55.56%)
9 8595 bp 69.20 54.92 96.27
cn_combo_scaffold_11697 XAN48_267
Order: Xanthomonadales (60%)
5 5441 bp 70.48 47.56 96.25
cn_combo_scaffold_8825 XAN48_176
Genus: Lysobacter (58.33%)
12 9116 bp 70.15 52.05 96.19
cn_combo_scaffold_11691 XAN48_266
Class: Gammaproteobacteria (80%)
5 5443 bp 71.65 50.56 96.16
cn_combo_scaffold_11368 XAN48_253
Genus: Lysobacter (57.14%)
7 5596 bp 70.98 52.06 96.12
cn_combo_scaffold_9442 XAN48_194
Genus: Lysobacter (55.56%)
18 13677 bp 70.01 63.19 96.12
cn_combo_scaffold_4628 XAN48_59
Genus: Lysobacter (57.14%)
7 12711 bp 70.10 49.08 96.08
cn_combo_scaffold_11359 XAN48_252
Genus: Lysobacter (57.14%)
7 5599 bp 70.10 47.20 96.07
cn_combo_scaffold_12099 XAN48_285
Order: Xanthomonadales (60%)
5 5272 bp 71.05 44.67 96.05
cn_combo_scaffold_12137 XAN48_288
Order: Xanthomonadales (66.67%)
6 5257 bp 71.89 48.39 96.04
cn_combo_scaffold_1845 XAN48_6
Order: Xanthomonadales (84%)
25 29369 bp 65.40 52.36 95.98
cn_combo_scaffold_3714 XAN48_35
Genus: Lysobacter (64.71%)
17 18128 bp 71.61 50.51 95.97
cn_combo_scaffold_6206 XAN48_108
Order: Xanthomonadales (88.89%)
9 9714 bp 63.21 47.45 95.89
cn_combo_scaffold_18960 XAN48_335
Order: Xanthomonadales (80%)
5 6276 bp 70.25 55.70 95.89
cn_combo_scaffold_10395 XAN48_225
Species: Stenotrophomonas maltophilia (50%)
4 6089 bp 59.85 7.42 95.83
cn_combo_scaffold_6073 XAN48_106
Order: Xanthomonadales (70%)
10 9904 bp 68.88 48.64 95.78
cn_combo_scaffold_12107 XAN48_286
Genus: Lysobacter (60%)
5 5269 bp 71.19 44.92 95.71
cn_combo_scaffold_11831 XAN48_274
Order: Xanthomonadales (66.67%)
3 5385 bp 69.92 50.66 95.71
cn_combo_scaffold_16380 XAN48_330
Genus: Lysobacter (50%)
6 6044 bp 69.57 49.22 95.70
cn_combo_scaffold_10069 XAN48_217
Genus: Lysobacter (80%)
10 6284 bp 69.57 47.95 95.67
cn_combo_scaffold_9622 XAN48_203
Genus: Lysobacter (55.56%)
9 7304 bp 72.02 50.77 95.66
cn_combo_scaffold_2690 XAN48_14
Order: Xanthomonadales (87.5%)
16 20876 bp 70.04 53.44 95.56
cn_combo_scaffold_6549 XAN48_120
Genus: Lysobacter (50%)
10 10131 bp 69.88 47.04 95.56
cn_combo_scaffold_9667 XAN48_205
Genus: Lysobacter (62.5%)
8 6515 bp 69.56 50.70 95.55
cn_combo_scaffold_12154 XAN48_289
Genus: Lysobacter (66.67%)
6 5251 bp 70.23 51.19 95.52
cn_combo_scaffold_4697 XAN48_60
Order: Xanthomonadales (73.33%)
15 12521 bp 71.36 54.18 95.50
cn_combo_scaffold_3189 XAN48_29
Genus: Lysobacter (70.59%)
17 17886 bp 72.65 52.25 95.49
cn_combo_scaffold_12789 XAN48_307
Genus: Lysobacter (66.67%)
6 5021 bp 65.01 11.89 95.36
cn_combo_scaffold_4577 XAN48_58
Order: Xanthomonadales (80%)
15 12849 bp 69.14 45.91 95.35
cn_combo_scaffold_12359 XAN48_297
Order: Xanthomonadales (66.67%)
6 5173 bp 69.90 50.16 95.34
cn_combo_scaffold_5041 XAN48_71
Order: Xanthomonadales (81.82%)
11 11672 bp 69.98 50.91 95.28
cn_combo_scaffold_3153 XAN48_27
Order: Xanthomonadales (68.18%)
22 18100 bp 73.64 50.91 95.28
cn_combo_scaffold_4198 XAN48_50
Genus: Lysobacter (53.33%)
15 13927 bp 71.98 53.42 95.28
cn_combo_scaffold_8201 XAN48_162
Genus: Lysobacter (53.33%)
15 12723 bp 71.52 48.71 95.26
cn_combo_scaffold_3066 XAN48_23
Genus: Lysobacter (50%)
22 18528 bp 72.45 48.48 95.25
cn_combo_scaffold_5145 XAN48_76
Species: Hydrocarboniphaga effusa (57.14%)
7 11460 bp 69.73 53.16 95.24
cn_combo_scaffold_14729 XAN48_325
Genus: Lysobacter (70%)
10 7284 bp 70.54 53.12 95.22
cn_combo_scaffold_1971 XAN48_7
Order: Xanthomonadales (60.71%)
28 27681 bp 65.40 50.93 95.22
cn_combo_scaffold_2635 XAN48_13
Phylum: Proteobacteria (62.5%)
24 21221 bp 67.75 33.87 95.20
cn_combo_scaffold_6543 XAN48_118
Genus: Lysobacter (69.23%)
13 9254 bp 69.93 46.67 95.18
cn_combo_scaffold_7533 XAN48_142
Genus: Lysobacter (62.5%)
8 8177 bp 70.88 45.20 95.17
cn_combo_scaffold_5176 XAN48_79
Species: Xanthomonas vesicatoria (50%)
12 11385 bp 63.08 31.08 95.15
cn_combo_scaffold_8682 XAN48_174
Order: Xanthomonadales (85.71%)
7 9384 bp 69.46 53.75 95.14
cn_combo_scaffold_6294 XAN48_111
Genus: Lysobacter (70%)
10 9587 bp 69.06 47.56 95.13
cn_combo_scaffold_8118 XAN48_161
Genus: Lysobacter (62.5%)
8 7660 bp 69.77 52.73 95.09
cn_combo_scaffold_5151 XAN48_77
Species: Hydrocarboniphaga effusa (71.43%)
7 11450 bp 68.58 47.01 95.08
cn_combo_scaffold_11422 XAN48_257
Genus: Lysobacter (77.78%)
9 5575 bp 68.59 48.61 95.03
cn_combo_scaffold_8253 XAN48_164
Genus: Lysobacter (60%)
10 7555 bp 69.16 48.44 95.02
cn_combo_scaffold_9527 XAN48_199
Genus: Lysobacter (76.92%)
13 11718 bp 69.71 46.89 94.98
Displaying items 51-100 of 344 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.