ggKbase home page
Advanced Search
Search Help

CN-SCN_Xanthomonadaceae_48x

CN-SCN_Xanthomonadales_69_49
In projects: CN-SCN

Consensus taxonomy: Xanthomonadales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 49.15 Longest contig: 56.08 Kbp Bin length: 3.65 Mbp GC content: 68.82 %
Contigs count: 344 Features count: 3771 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 7 / 55 MC: 5 BSCG 10 / 51 MC: 6 ASCG 6 / 38 MC: 3

Description

Partial double 6 and 6

Displaying items 201-250 of 344 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_9136 XAN48_183
Genus: Lysobacter (75%)
8 6884 bp 67.56 48.33 92.21
cn_combo_scaffold_9449 XAN48_193
Order: Xanthomonadales (80%)
5 6652 bp 69.59 51.56 92.18
cn_combo_scaffold_3241 XAN48_31
Order: Xanthomonadales (58.82%)
17 17635 bp 70.93 57.23 92.12
cn_combo_scaffold_11335 XAN48_250
Order: Xanthomonadales (85.71%)
7 5609 bp 68.05 44.41 92.10
cn_combo_scaffold_8673 XAN48_172
Order: Xanthomonadales (55.56%)
9 7232 bp 63.41 9.31 92.09
cn_combo_scaffold_9501 XAN48_198
Order: Xanthomonadales (77.78%)
9 6624 bp 70.94 53.41 92.07
cn_combo_scaffold_9336 XAN48_190
Genus: Lysobacter (50%)
6 6723 bp 69.31 50.30 92.06
cn_combo_scaffold_10000 XAN48_214
Order: Xanthomonadales (55.56%)
9 6512 bp 68.69 56.02 92.05
cn_combo_scaffold_6903 XAN48_127
Order: Xanthomonadales (76.92%)
13 15928 bp 71.75 53.06 92.00
cn_combo_scaffold_12345 XAN48_296
Class: Gammaproteobacteria (50%)
6 5179 bp 70.90 51.15 91.99
cn_combo_scaffold_20770 XAN48_339
Genus: Lysobacter (50%)
8 8204 bp 69.59 55.47 91.97
cn_combo_scaffold_12002 XAN48_284
Order: Xanthomonadales (60%)
5 5312 bp 69.63 48.48 91.94
cn_combo_scaffold_3212 XAN48_30
Order: Xanthomonadales (74.42%)
43 38978 bp 69.35 50.68 91.93
cn_combo_scaffold_2507 XAN48_11
Order: Xanthomonadales (94.12%)
17 22043 bp 71.51 50.40 91.92
cn_combo_scaffold_1609 XAN48_5
Class: Gammaproteobacteria (60.87%)
23 32426 bp 66.01 51.66 91.92
cn_combo_scaffold_11951 XAN48_281
Genus: Xanthomonas (57.14%)
7 5334 bp 69.67 46.16 91.90
cn_combo_scaffold_12215 XAN48_294
Order: Xanthomonadales (87.5%)
8 5229 bp 70.87 50.55 91.85
cn_combo_scaffold_6364 XAN48_115
Genus: Lysobacter (63.64%)
11 9502 bp 73.18 50.62 91.84
cn_combo_scaffold_11847 XAN48_275
Order: Xanthomonadales (71.43%)
7 5381 bp 70.47 48.75 91.82
cn_combo_scaffold_13703 XAN48_313
Species: Pseudoxanthomonas suwonensis (50%)
8 7808 bp 68.78 53.75 91.66
cn_combo_scaffold_8095 XAN48_158
Order: Xanthomonadales (77.78%)
9 7683 bp 68.85 49.26 91.64
cn_combo_scaffold_5504 XAN48_86
Class: Gammaproteobacteria (54.55%)
11 10806 bp 67.67 54.72 91.64
cn_combo_scaffold_12183 XAN48_290
Order: Xanthomonadales (75%)
8 5241 bp 69.72 46.14 91.64
cn_combo_scaffold_8624 XAN48_170
Genus: Xanthomonas (66.67%)
9 7266 bp 63.39 11.95 91.58
cn_combo_scaffold_5494 XAN48_85
Genus: Lysobacter (58.33%)
12 10819 bp 69.68 48.05 91.53
cn_combo_scaffold_5675 XAN48_92
Order: Xanthomonadales (92.31%)
13 15087 bp 69.30 49.63 91.53
cn_combo_scaffold_12125 XAN48_287
Order: Xanthomonadales (50%)
8 8170 bp 69.17 50.17 91.51
cn_combo_scaffold_11883 XAN48_277
Genus: Lysobacter (66.67%)
6 5364 bp 69.48 57.01 91.50
cn_combo_scaffold_6068 XAN48_105
Genus: Lysobacter (53.85%)
13 9907 bp 67.79 45.96 91.48
cn_combo_scaffold_3227 XAN48_32
Order: Xanthomonadales (88.89%)
36 34742 bp 67.20 48.07 91.43
cn_combo_scaffold_20165 XAN48_338
Genus: Lysobacter (50%)
8 5564 bp 70.13 50.11 91.39
cn_combo_scaffold_14041 XAN48_317
Order: Xanthomonadales (71.43%)
7 7391 bp 69.41 53.86 91.37
cn_combo_scaffold_5997 XAN48_101
Order: Xanthomonadales (55.56%)
9 9995 bp 70.32 49.60 91.37
cn_combo_scaffold_9613 XAN48_202
Order: Xanthomonadales (60%)
5 7030 bp 68.69 48.01 91.37
cn_combo_scaffold_11228 XAN48_249
Genus: Lysobacter (57.14%)
7 7293 bp 70.59 50.56 91.36
cn_combo_scaffold_11623 XAN48_264
Genus: Lysobacter (66.67%)
6 5478 bp 68.67 54.78 91.35
cn_combo_scaffold_11031 XAN48_245
Order: Xanthomonadales (88.89%)
9 6700 bp 69.22 50.90 91.34
cn_combo_scaffold_6313 XAN48_112
Order: Xanthomonadales (75%)
8 9564 bp 70.91 49.68 91.31
cn_combo_scaffold_6261 XAN48_110
Order: Xanthomonadales (63.64%)
11 10761 bp 69.12 49.96 91.29
cn_combo_scaffold_9460 XAN48_195
Genus: Lysobacter (66.67%)
9 6645 bp 68.22 47.87 91.24
cn_combo_scaffold_11338 XAN48_251
Genus: Lysobacter (62.5%)
8 5608 bp 69.70 46.79 91.21
cn_combo_scaffold_10739 XAN48_235
Genus: Lysobacter (50%)
10 11454 bp 67.46 53.88 91.07
cn_combo_scaffold_3919 XAN48_41
Genus: Lysobacter (71.43%)
14 16017 bp 69.66 53.50 91.03
cn_combo_scaffold_14233 XAN48_320
Order: Xanthomonadales (85.71%)
7 6173 bp 69.46 46.02 90.98
cn_combo_scaffold_2082 XAN48_8
Order: Xanthomonadales (70.59%)
17 26316 bp 68.25 55.60 90.94
cn_combo_scaffold_5085 XAN48_74
Order: Xanthomonadales (53.85%)
13 11585 bp 57.10 42.70 90.92
cn_combo_scaffold_5136 XAN48_75
Order: Xanthomonadales (57.14%)
14 11985 bp 67.48 52.72 90.89
cn_combo_scaffold_8672 XAN48_173
Genus: Lysobacter (66.67%)
9 10761 bp 68.55 51.83 90.80
cn_combo_scaffold_4508 XAN48_57
Order: Xanthomonadales (62.5%)
16 13023 bp 67.72 54.48 90.72
cn_combo_scaffold_10831 XAN48_238
Order: Xanthomonadales (70%)
10 9970 bp 72.58 48.09 90.69
Displaying items 201-250 of 344 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.