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gwf2_scaffold_913

Alias: PER_GWF2_39_17_10

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_913_1
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

165..1751
DNA (1587bp) protein (529aa)
Uncharacterized protein n=1 Tax=Cyanothece sp. CCY0110 RepID=A3IUT7_9CHRO
hypothetical protein Tax=PER_GWF2_39_17
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=324 to=346)
gwf2_scaffold_913_2
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

1767..4136
DNA (2370bp) protein (790aa)
Uncharacterized protein n=1 Tax=Cyanothece sp. CCY0110 RepID=A3IUT6_9CHRO
alpha-L-glutamate ligase Tax=PER_GWF2_39_17
hypothetical protein
Glutathione synthetase ATP-binding domain-like (db=superfamily db_id=SSF56059 from=36 to=292 evalue=1.4e-14)
gwf2_scaffold_913_3
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

4149..4565
DNA (417bp) protein (139aa)
FMN adenylyltransferase,riboflavin kinase, riboflavin kinase / FMN adenylyltransferase {ECO:0000313|EMBL:KKR24732.1}; EC=2.7.1.26 {ECO:0000313|EMBL:KKR24732.1};; TaxID=1619064 species="Bacteria; Pereg
FMN adenylyltransferase;riboflavin kinase (EC:2.7.1.26 2.7.7.2)
FMN adenylyltransferase;riboflavin kinase n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8CW76_HALOH
RIBOFLAVIN KINASE/FMN ADENYLYLTRANSFERASE (db=HMMPanther db_id=PTHR22749 from=1 to=131 evalue=1.8e-16 interpro_id=IPR023468 interpro_description=Riboflavin kinase)
gwf2_scaffold_913_4
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

4550..5893
DNA (1344bp) protein (448aa)
UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase {ECO:0000313|EMBL:KKR24733.1}; EC=6.3.2.13 {ECO:0000313|EMBL:K
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=2 Tax=Geobacillus RepID=MURE_GEOTN rbh
murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
seg (db=Seg db_id=seg from=241 to=257)
gwf2_scaffold_913_5
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

5909..6793
DNA (885bp) protein (295aa)
tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] Tax=PER_GWF2_39_17
tRNA pseudouridine synthase B n=1 Tax=Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1) RepID=E8T1X7_THEA1
tRNA pseudouridine synthase B
(db=HMMPfam db_id=PF01509 from=24 to=172 evalue=1.3e-49 interpro_id=IPR002501 interpro_description=Pseudouridine synthase II GO=Biological Process: RNA processing (GO:0006396))
gwf2_scaffold_913_6
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

6858..7934
DNA (1077bp) protein (359aa)
Glycosyl transferase, family 4, conserved region, UDP-N-acetylglucosamine:undecaprenyl-P N-acetylglucosaminyl 1-P transferase {ECO:0000313|EMBL:KKR07961.1}; EC=2.7.8.- {ECO:0000313|EMBL:KKR07961.1};;
Glycosyltransferase, group 4 family n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KZT0_9FIRM
UDP-N-acetylmuramyl pentapeptide phosphotransferase
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
gwf2_scaffold_913_7
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

7987..9768
DNA (1782bp) protein (594aa)
DNA primase; K02316 DNA primase [EC:2.7.7.-] Tax=PER_GWF2_39_17
DNA primase n=7 Tax=Dehalococcoides mccartyi RepID=Q3Z903_DEHE1 rbh
DNA primase
seg (db=Seg db_id=seg from=364 to=376)
gwf2_scaffold_913_8
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

9775..10944
DNA (1170bp) protein (390aa)
RNA polymerase sigma factor n=1 Tax=Clostridium ultunense Esp RepID=M1Z3C1_9CLOT rbh
RpoD subfamily RNA polymerase sigma-70 subunit, RNA polymerase primary sigma factor {ECO:0000313|EMBL:KKR07963.1}; TaxID=1619067 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacte
RpoD subfamily RNA polymerase sigma-70 subunit
seg (db=Seg db_id=seg from=96 to=103)
gwf2_scaffold_913_9
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

10977..11471
DNA (495bp) protein (165aa)
Transcription elongation factor GreA n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3A9M1_CARHZ
greA; transcription elongation factor GreA; K03624 transcription elongation factor GreA Tax=PER_GWF2_39_17
greA; transcription elongation factor GreA
GREAB_1 (db=PatternScan db_id=PS00829 from=25 to=56 evalue=0.0 interpro_id=IPR018151 interpro_description=Transcription elongation factor, GreA/GreB, conserved site GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription elongation, DNA-dependent (GO:0032784))
gwf2_scaffold_913_10
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(11497..11925)
DNA (429bp) protein (143aa)
transmembrane_regions Tax=PER_GWF2_39_17
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=21 to=41)
gwf2_scaffold_913_11
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(11938..12717)
DNA (780bp) protein (260aa)
prolipoprotein diacylglyceryl transferase; K13292 phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC:2.-.-.-] Tax=PER_GWF2_39_17
Prolipoprotein diacylglyceryl transferase n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FFR0_DESAA
prolipoprotein diacylglyceryl transferase
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
gwf2_scaffold_913_12
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(12722..14098)
DNA (1377bp) protein (459aa)
transmembrane_regions Tax=PER_GWF2_39_17
transmembrane_regions (db=TMHMM db_id=tmhmm from=368 to=390)
seg (db=Seg db_id=seg from=231 to=242)
gwf2_scaffold_913_13
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(14109..15728)
DNA (1620bp) protein (540aa)
CTP synthase; K01937 CTP synthase [EC:6.3.4.2] Tax=PER_GWF2_39_17
CTP synthase (EC:6.3.4.2)
CTP synthase n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S0N5_THEOJ rbh
PyrG: CTP synthase (db=HMMTigr db_id=TIGR00337 from=1 to=534 evalue=0.0 interpro_id=IPR004468 interpro_description=CTP synthase GO=Molecular Function: CTP synthase activity (GO:0003883), Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221))
gwf2_scaffold_913_14
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(15754..16722)
DNA (969bp) protein (323aa)
tryptophanyl-tRNA synthetase; K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] Tax=PER_GWF2_39_17
Tryptophan--tRNA ligase n=1 Tax=Leptotrichia buccalis (strain ATCC 14201 / DSM 1135 / JCM 12969 / NCTC 10249) RepID=C7N9U1_LEPBD rbh
tryptophanyl-tRNA synthetase
AA_TRNA_LIGASE_I (db=PatternScan db_id=PS00178 from=10 to=19 evalue=0.0 interpro_id=IPR001412 interpro_description=Aminoacyl-tRNA synthetase, class I, conserved site GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
gwf2_scaffold_913_15
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(16850..19006)
DNA (2157bp) protein (719aa)
primosome assembly protein PriA; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] Tax=PER_GWF2_39_17
Primosomal protein N` n=1 Tax=Clostridium novyi (strain NT) RepID=A0Q117_CLONN rbh
primosome assembly protein PriA
(db=HMMPfam db_id=PF00270 from=196 to=350 evalue=1.2e-12 interpro_id=IPR011545 interpro_description=DNA/RNA helicase, DEAD/DEAH box type, N-terminal GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: ATP binding (GO:0005524), Molecular Function: ATP-dependent helicase activity (GO:0008026))
gwf2_scaffold_913_16
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(19028..21322)
DNA (2295bp) protein (765aa)
Cellulosome-anchoring protein n=1 Tax=sediment metagenome RepID=D9PNH4_9ZZZZ
s-layer domain-containing protein Tax=PER_GWF2_39_17
Ig-like domain-containing protein,putative S-layer protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
gwf2_scaffold_913_17
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(21420..22601)
DNA (1182bp) protein (394aa)
LL-diaminopimelate aminotransferase; K10206 LL-diaminopimelate aminotransferase [EC:2.6.1.83] Tax=PER_GWF2_39_17
Similar to N-succinyldiaminopimelate aminotransferase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q3U7_9BACT rbh
diaminopimelate aminotransferase
AA_TRANSFER_CLASS_1 (db=PatternScan db_id=PS00105 from=235 to=248 evalue=0.0 interpro_id=IPR004838 interpro_description=Aminotransferases, class-I, pyridoxal-phosphate-binding site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: biosynthetic process (GO:0009058), Molecular Function: pyridoxal phosphate binding (GO:0030170))
gwf2_scaffold_913_18
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(22598..23839)
DNA (1242bp) protein (414aa)
Diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20] Tax=PER_GWF2_39_17
diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=1 Tax=Flexistipes sinusarabici (strain DSM 4947 / MAS 10) RepID=F8E922_FLESM rbh
ODR_DC_2_1 (db=PatternScan db_id=PS00878 from=54 to=72 evalue=0.0 interpro_id=IPR022653 interpro_description=Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site)
gwf2_scaffold_913_19
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

comp(23836..24708)
DNA (873bp) protein (291aa)
Dihydrodipicolinate synthase, dihydrodipicolinate synthase {ECO:0000313|EMBL:KKR25831.1}; EC=4.3.3.7 {ECO:0000313|EMBL:KKR25831.1};; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Pereg
dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1R554_SPISS rbh
DHDPS_1 (db=PatternScan db_id=PS00665 from=38 to=55 evalue=0.0 interpro_id=IPR020624 interpro_description=Dihydrodipicolinate synthetase, conserved site GO=Biological Process: metabolic process (GO:0008152), Molecular Function: lyase activity (GO:0016829))
gwf2_scaffold_913_20
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

comp(24736..25485)
DNA (750bp) protein (250aa)
Dihydrodipicolinate reductase, dihydrodipicolinate reductase {ECO:0000313|EMBL:KKR25830.1}; EC=1.17.1.8 {ECO:0000313|EMBL:KKR25830.1};; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Pe
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase n=2 Tax=Spirochaeta thermophila RepID=E0RS30_SPITD
(db=HMMPfam db_id=PF01113 from=1 to=109 evalue=1.3e-10 interpro_id=IPR000846 interpro_description=Dihydrodipicolinate reductase, N-terminal GO=Molecular Function: dihydrodipicolinate reductase activity (GO:0008839), Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089), Biological Process: oxidation-reduction process (GO:0055114))
gwf2_scaffold_913_21
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(25511..26578)
DNA (1068bp) protein (356aa)
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11); K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] Tax=PER_GWF2_39_17
aspartate-semialdehyde dehydrogenase n=1 Tax=Sporolactobacillus vineae DSM 21990 = SL153 RepID=UPI000287A44B rbh
aspartate-semialdehyde dehydrogenase
(db=HMMPfam db_id=PF01118 from=6 to=135 evalue=1.6e-29 interpro_id=IPR000534 interpro_description=Semialdehyde dehydrogenase, NAD-binding GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: cellular amino acid metabolic process (GO:0006520), Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor (GO:0016620), Molecular Function: NAD binding (GO:0051287), Biological Process: oxidation-reduction process (GO:0055114))
gwf2_scaffold_913_22
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(26590..27975)
DNA (1386bp) protein (462aa)
aspartate kinase III; K00928 aspartate kinase [EC:2.7.2.4] Tax=PER_GWF2_39_17
Aspartokinase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRL6_KORVE
aspartate kinase
ASPARTOKINASE (db=PatternScan db_id=PS00324 from=9 to=17 evalue=0.0 interpro_id=IPR018042 interpro_description=Aspartate kinase, conserved site GO=Molecular Function: aspartate kinase activity (GO:0004072), Biological Process: cellular amino acid biosynthetic process (GO:0008652))
gwf2_scaffold_913_23
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

comp(28198..29481)
DNA (1284bp) protein (428aa)
Glycine hydroxymethyltransferase, glycine hydroxymethyltransferase {ECO:0000313|EMBL:KKR25827.1}; EC=2.1.2.1 {ECO:0000313|EMBL:KKR25827.1};; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" sourc
glycine hydroxymethyltransferase (EC:2.1.2.1)
Glycine hydroxymethyltransferase n=1 Tax=sediment metagenome RepID=D9PFE3_9ZZZZ rbh
SHMT (db=PatternScan db_id=PS00096 from=231 to=247 evalue=0.0 interpro_id=IPR019798 interpro_description=Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO=Molecular Function: glycine hydroxymethyltransferase activity (GO:0004372), Biological Process: glycine metabolic process (GO:0006544), Biological Process: L-serine metabolic process (GO:0006563), Molecular Function: pyridoxal phosphate binding (GO:0030170))
gwf2_scaffold_913_24
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(29537..30130)
DNA (594bp) protein (198aa)
5-formyltetrahydrofolate cyclo-ligase; K01934 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] Tax=PER_GWF2_39_17
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7U3A1_9EURY
5-formyltetrahydrofolate cyclo-ligase
(db=HMMPfam db_id=PF01812 from=3 to=179 evalue=1.5e-41 interpro_id=IPR002698 interpro_description=5-formyltetrahydrofolate cyclo-ligase GO=Molecular Function: ATP binding (GO:0005524), Biological Process: folic acid-containing compound biosynthetic process (GO:0009396), Molecular Function: 5-formyltetrahydrofolate cyclo-ligase activity (GO:0030272))
gwf2_scaffold_913_25
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

30175..31320
DNA (1146bp) protein (382aa)
HtrA2 peptidase n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RXP1_THEOJ
HtrA2 peptidase Tax=PER_GWF2_39_17
protease Do
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
gwf2_scaffold_913_26
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(31679..33694)
DNA (2016bp) protein (672aa)
ATP-dependent DNA helicase RecG; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12] Tax=PER_GWF2_39_17
ATP-dependent DNA helicase RecG n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C521_SPHTD rbh
ATP-dependent DNA helicase RecG
(db=HMMPfam db_id=PF01336 from=74 to=138 evalue=0.00024 interpro_id=IPR004365 interpro_description=Nucleic acid binding, OB-fold, tRNA/helicase-type GO=Molecular Function: nucleic acid binding (GO:0003676))
gwf2_scaffold_913_27
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(33697..34887)
DNA (1191bp) protein (397aa)
tyrZ; tyrosyl-tRNA synthetase (EC:6.1.1.1); K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1] Tax=PER_GWF2_39_17
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) RepID=SYY_BACHD rbh
coiled-coil (db=Coil db_id=coil from=287 to=308 evalue=NA)
gwf2_scaffold_913_28
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

34959..35906
DNA (948bp) protein (316aa)
Pseudouridine synthase n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8AC89_THEID
RNA pseudouridine synthase Tax=PER_GWF2_39_17
RluA family pseudouridine synthase
PSI_RLU (db=PatternScan db_id=PS01129 from=137 to=151 evalue=0.0 interpro_id=IPR006224 interpro_description=Pseudouridine synthase, RluC/RluD, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
gwf2_scaffold_913_29
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists


comp(35886..36344)
DNA (459bp) protein (153aa)
Ribosomal protein L21 n=1 Tax=human gut metagenome RepID=K1SKD6_9ZZZZ
50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 Tax=PER_GWF2_39_17
rplU; 50S ribosomal protein L21
seg (db=Seg db_id=seg from=112 to=146)
gwf2_scaffold_913_30
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(36419..36997)
DNA (579bp) protein (193aa)
peptidyl-tRNA hydrolase; K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] Tax=PER_GWF2_39_17
Peptidyl-tRNA hydrolase (Fragment) n=1 Tax=Heliobacillus mobilis RepID=Q8GDS9_HELMO
peptidyl-tRNA hydrolase
PEPT_TRNA_HYDROL_1 (db=PatternScan db_id=PS01195 from=14 to=27 evalue=0.0 interpro_id=IPR018171 interpro_description=Peptidyl-tRNA hydrolase, conserved site GO=Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045))
Displaying items 1-30 of 71 in total

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