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L1_008_000M1_scaffold_43

Search features with annotation key words

Displaying items 91-120 of 164 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_43_91
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(105635..106453)
DNA (819bp) protein (273aa)
suhB; inositol-1-monophosphatase (EC:3.1.3.25)
Inositol monophosphatase family protein {ECO:0000313|EMBL:KFI42701.1}; EC=3.1.3.25 {ECO:0000313|EMBL:KFI42701.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Inositol monophosphatase family protein n=5 Tax=Bifidobacterium bifidum RepID=E4P0W0_BIFBP
L1_008_000M1_scaffold_43_92
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(106615..108255)
DNA (1641bp) protein (547aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=R6GM57_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22749.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Pup-ligase protein domain
L1_008_000M1_scaffold_43_93
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(108252..109943)
DNA (1692bp) protein (564aa)
ATPase AAA (EC:3.6.1.3)
AAA ATPase forming ring-shaped complexes n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DNF8_BIFBI
AAA ATPase forming ring-shaped complexes {ECO:0000256|SAAS:SAAS00017598}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_43_94
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

110164..110919
DNA (756bp) protein (252aa)
serB; phosphoserine phosphatase (EC:3.1.3.3)
SerB Phosphoserine phosphatase {ECO:0000313|EMBL:KFI42698.1}; EC=3.1.3.3 {ECO:0000313|EMBL:KFI42698.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Phosphoserine phosphatase SerB n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CEY7_BIFBI
L1_008_000M1_scaffold_43_95
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(111109..112083)
DNA (975bp) protein (325aa)
fmt; methionyl-tRNA formyl transferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Methionyl-tRNA formyltransferase n=3 Tax=Bifidobacterium bifidum RepID=I3WH43_BIFBI
L1_008_000M1_scaffold_43_96
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(112174..112878)
DNA (705bp) protein (235aa)
putative alpha beta hydrolase (EC:3.8.1.2)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=9 Tax=Bifidobacterium RepID=E3ENY1_BIFBS
HAD-superfamily hydrolase, subfamily IA, variant 3 {ECO:0000313|EMBL:ADO52856.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_43_97
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(113608..115848)
DNA (2241bp) protein (747aa)
Putative primosomal protein N n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V8Q4_BIFBI
Putative primosomal protein N {ECO:0000313|EMBL:EFR49996.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
priA; Primosomal protein N'
L1_008_000M1_scaffold_43_98
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(116036..117253)
DNA (1218bp) protein (406aa)
metK; methionine adenosyl transferase (EC:2.5.1.6)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
S-adenosylmethionine synthase n=5 Tax=Bifidobacterium RepID=E4V8Q3_BIFBI
L1_008_000M1_scaffold_43_99
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(117504..117827)
DNA (324bp) protein (108aa)
rpoZ; DNA-directed RNA polymerase subunit omega (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
DNA-directed RNA polymerase subunit omega n=8 Tax=Bifidobacterium RepID=E3ENX7_BIFBS
L1_008_000M1_scaffold_43_100
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

118151..119920
DNA (1770bp) protein (590aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
ilvD; dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=3 Tax=Bifidobacterium RepID=E4P0V1_BIFBP
L1_008_000M1_scaffold_43_101
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(120276..121172)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GM49_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42691.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_43_102
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(121536..124241)
DNA (2706bp) protein (902aa)
acn; aconitate hydratase (EC:4.2.1.3)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Aconitate hydratase n=3 Tax=Bifidobacterium bifidum RepID=E3ENX4_BIFBS
L1_008_000M1_scaffold_43_103
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(124314..126869)
DNA (2556bp) protein (852aa)
Cation-transporting ATPase n=2 Tax=Bifidobacterium bifidum RepID=K2HB50_BIFBI
Cation-transporting ATPase {ECO:0000313|EMBL:EKE51256.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
ctpE; putative cation-transporting ATPase E
L1_008_000M1_scaffold_43_104
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(127167..127781)
DNA (615bp) protein (205aa)
Conserved hypothetical secreted protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENX2_BIFBS
hypothetical protein
Conserved hypothetical secreted protein {ECO:0000313|EMBL:ADO52847.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_43_105
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(127786..129048)
DNA (1263bp) protein (421aa)
tRNA (Uracil-5-) -methyltransferase (EC:2.1.1.35)
tRNA (Uracil-5-)-methyltransferase n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M1J2_BIFBI
TRAM domain protein {ECO:0000313|EMBL:ERI83086.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ97816.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_43_106
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(129074..129847)
DNA (774bp) protein (258aa)
ABC-type Mn2+/Zn2+ transport systems, permease component n=4 Tax=Bifidobacterium RepID=I3WH31_BIFBI
ABC-type Mn2+/Zn2+ transport systems, permease component
ABC-type Mn2+/Zn2+ transport systems permease component {ECO:0000313|EMBL:CDB22733.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_43_107
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(129887..130708)
DNA (822bp) protein (274aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2LDA0_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83084.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L1_008_000M1_scaffold_43_108
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(130848..131705)
DNA (858bp) protein (286aa)
Exodeoxyribonuclease III n=2 Tax=Bifidobacterium bifidum RepID=E3ENW8_BIFBS
xth; Exodeoxyribonuclease III
Exodeoxyribonuclease {ECO:0000313|EMBL:EKE51261.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L1_008_000M1_scaffold_43_109
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

131846..133276
DNA (1431bp) protein (477aa)
pepC; aminopeptidase C (EC:3.4.22.40)
Aminopeptidase C n=4 Tax=Bifidobacterium RepID=I3WH28_BIFBI
Aminopeptidase C {ECO:0000313|EMBL:CDB22730.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_43_110
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(133472..135262)
DNA (1791bp) protein (597aa)
ABC transporter, substrate-binding protein, family 5 n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DTI7_BIFBI
ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:ERI83081.1}; Dipeptide/oligopeptide ABC transporter substrate binding component {ECO:0000313|EMBL:BAQ97811.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
oppA; oligopeptide-binding protein OppA
L1_008_000M1_scaffold_43_111
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(135426..137642)
DNA (2217bp) protein (739aa)
oppD; oligopeptide transport ATP-binding protein OppD (EC:3.6.3.24)
Putative phosphonate C-P lyase system protein PhnK n=2 Tax=Bifidobacterium bifidum RepID=U2CEW7_BIFBI
OppD Oligopeptide transport ATP-binding protein {ECO:0000313|EMBL:CDB22728.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_43_112
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(137642..138586)
DNA (945bp) protein (315aa)
Putative oligopeptide ABC transporter, permease protein OppC n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BXY4_BIFBI
OppC Oligopeptide transport system permease protein {ECO:0000313|EMBL:KFI42681.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
oppC; oligopeptide transport system permease protein oppC
L1_008_000M1_scaffold_43_113
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(138608..139591)
DNA (984bp) protein (328aa)
Peptide/nickel transport system, permease protein n=7 Tax=Bifidobacterium RepID=E3ENW3_BIFBS
oppB; oligopeptide transport system permease protein OppB
Putative peptide transport permease protein {ECO:0000313|EMBL:AFL04187.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_43_114
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(139977..140981)
DNA (1005bp) protein (335aa)
Tyrosine recombinase XerC n=2 Tax=Bifidobacterium bifidum RepID=I3WH23_BIFBI
xerC; tyrosine recombinase
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_43_115
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

141067..141318
DNA (252bp) protein (84aa)
Uncharacterized protein n=8 Tax=Bifidobacterium RepID=I3WH22_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52836.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_43_116
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(141392..142255)
DNA (864bp) protein (288aa)
TyrA Prephenate dehydrogenase {ECO:0000313|EMBL:KFI42677.1}; EC=1.3.1.12 {ECO:0000313|EMBL:KFI42677.1};; EC=1.3.1.43 {ECO:0000313|EMBL:KFI42677.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Prephenate dehydrogenase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GB93_9BIFI
tyrA1; prephenate dehydrogenase
L1_008_000M1_scaffold_43_117
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(142423..143454)
DNA (1032bp) protein (344aa)
pheA; prephenate dehydratase (EC:4.2.1.51)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6H907_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22722.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_43_118
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(143451..143984)
DNA (534bp) protein (178aa)
Alcohol dehydrogenase class IV n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GN93_9BIFI
Alcohol dehydrogenase class IV {ECO:0000313|EMBL:CDB22721.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
alcohol dehydrogenase
L1_008_000M1_scaffold_43_119
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(144622..146544)
DNA (1923bp) protein (641aa)
typA; GTP-binding protein TypA (EC:2.7.7.4)
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:KFI42674.1}; EC=3.6.5.- {ECO:0000313|EMBL:KFI42674.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
GTP-binding protein TypA/BipA n=7 Tax=Bifidobacterium RepID=E4P0S7_BIFBP
L1_008_000M1_scaffold_43_120
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(146725..148002)
DNA (1278bp) protein (426aa)
iscS; putative cysteine desulfurase (EC:2.8.1.7)
Putative cysteine desulfurase {ECO:0000313|EMBL:AFL04180.1}; EC=2.8.1.7 {ECO:0000313|EMBL:AFL04180.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Putative cysteine desulfurase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WH17_BIFBI
Displaying items 91-120 of 164 in total

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