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L1_008_000M1_scaffold_43

Search features with annotation key words

Displaying items 1-30 of 164 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_43_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3..149
DNA (147bp) protein (49aa)
Transposase n=2 Tax=Bifidobacterium bifidum RepID=K2M341_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82301.1}; Flags: Fragment;; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
transposase
L1_008_000M1_scaffold_43_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(528..1115)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HQQ7_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:BAQ97924.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L1_008_000M1_scaffold_43_3
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1140..1355)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GD81_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22330.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L1_008_000M1_scaffold_43_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2233..2367)
DNA (135bp) protein (45aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQR3_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52955.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_43_5
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2583..3062)
DNA (480bp) protein (160aa)
Transcription elongation factor GreA n=8 Tax=Bifidobacterium RepID=E3EQR2_BIFBS
greA; transcription elongation factor
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00003926}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_43_6
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3121..3525)
DNA (405bp) protein (135aa)
fkbP; FKBP-type peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Peptidyl-prolyl cis-trans isomerase n=6 Tax=Bifidobacterium RepID=E4P138_BIFBP
L1_008_000M1_scaffold_43_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3686..5146)
DNA (1461bp) protein (487aa)
sdaA; l-serine dehydratase SdaA (EC:4.3.1.17)
L-serine ammonia-lyase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BYD8_BIFBI
L-serine ammonia-lyase {ECO:0000313|EMBL:ERI83204.1}; L-serine dehydratase {ECO:0000313|EMBL:BAQ97919.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_43_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5315..5884)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V907_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR50099.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
4-hydroxybenzoate polyprenyl transferase and related prenyl transferase
L1_008_000M1_scaffold_43_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6084..7082)
DNA (999bp) protein (333aa)
Exopolyphosphatase n=2 Tax=Bifidobacterium RepID=E3EQQ8_BIFBS
Exopolyphosphatase
Exopolyphosphatase {ECO:0000313|EMBL:ADO52950.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_43_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7232..7819)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CFA2_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI42780.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L1_008_000M1_scaffold_43_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7906..8487)
DNA (582bp) protein (194aa)
Septum formation initiator n=3 Tax=Bifidobacterium bifidum RepID=E4V904_BIFBI
hypothetical protein
Septum formation initiator {ECO:0000313|EMBL:ERI83199.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ97914.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_43_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8530..9828)
DNA (1299bp) protein (433aa)
eno; enolase (EC:4.2.1.11)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Enolase n=7 Tax=Bifidobacterium bifidum RepID=E3EQQ5_BIFBS
L1_008_000M1_scaffold_43_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10026..10838)
DNA (813bp) protein (271aa)
pabC; aminodeoxychorismate lyase (EC:4.1.3.38)
Branched-chain amino acid aminotransferase n=8 Tax=Bifidobacterium RepID=E3EQQ4_BIFBS
Aminotransferase, class IV {ECO:0000313|EMBL:ERI83197.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_43_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10807..12324)
DNA (1518bp) protein (506aa)
para-aminobenzoate synthase subunit I (EC:2.6.1.85)
Aminodeoxychorismate synthase, component I n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DTX5_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:BAQ97911.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_43_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12321..15920)
DNA (3600bp) protein (1200aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Transcription-repair-coupling factor n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHD2_BIFBI
mfd; transcription-repair coupling factor
L1_008_000M1_scaffold_43_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15910..16509)
DNA (600bp) protein (200aa)
pth; peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Peptidyl-tRNA hydrolase n=7 Tax=Bifidobacterium bifidum RepID=E3EQ21_BIFBS
L1_008_000M1_scaffold_43_17
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16513..17067)
DNA (555bp) protein (185aa)
Toxin-antitoxin system, toxin component, GNAT family n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CGP7_BIFBI
Phosphinothricin N-acetyltransferase {ECO:0000313|EMBL:CDB23059.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
phosphinothricin N-acetyltransferase
L1_008_000M1_scaffold_43_18
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17421..18212)
DNA (792bp) protein (264aa)
ABC transporter ATP-binding protein (EC:3.6.3.40)
Teichoic acid transport system, ATP-binding protein n=7 Tax=Bifidobacterium RepID=E3EQ19_BIFBS
ATP-binding protein ABC transporter system for polysaccharides {ECO:0000313|EMBL:CDB23058.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_43_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18202..19008)
DNA (807bp) protein (269aa)
Teichoic acid translocation permease protein n=4 Tax=Bifidobacterium RepID=I3WHC8_BIFBI
tagG; teichoic acid translocation permease
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_43_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19062..20105)
DNA (1044bp) protein (348aa)
NAD-dependent epimerase/dehydratase family protein (EC:4.1.1.35)
NAD-dependent epimerase/dehydratase family protein n=5 Tax=Bifidobacterium bifidum RepID=E4P124_BIFBP
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:ERI83189.1}; Putative dehydratase {ECO:0000313|EMBL:BAQ97905.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_43_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20132..20848)
DNA (717bp) protein (239aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
ispD; 2-C-methyl-D-erythritol 4-phosphatecytidylyl transferase (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M6N2_BIFBI
L1_008_000M1_scaffold_43_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20990..21205)
DNA (216bp) protein (72aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=I3WHC5_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52937.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_43_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21285..21506)
DNA (222bp) protein (74aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=I3WHC4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:BAQ97902.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L1_008_000M1_scaffold_43_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21526..22713)
DNA (1188bp) protein (396aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P121_BIFBP
hypothetical protein
Acyltransferase {ECO:0000313|EMBL:EFR50083.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L1_008_000M1_scaffold_43_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22716..24602)
DNA (1887bp) protein (629aa)
Glycosyl/glycerophosphate transferase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQ13_BIFBS
Glycosyl/glycerophosphate transferase {ECO:0000313|EMBL:EKF15612.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
glycosyl/glycerophosphate transferase
L1_008_000M1_scaffold_43_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24724..25845
DNA (1122bp) protein (374aa)
Putative ribitolphospho transferase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHC1_BIFBI
tarK; putative ribitolphospho transferase
Putative ribitolphospho transferase {ECO:0000313|EMBL:AFL04284.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_43_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26232..29495)
DNA (3264bp) protein (1088aa)
Conserved hypothetical membrane spanning protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQ11_BIFBS
UPF0182 protein BBIF_0728 {ECO:0000256|HAMAP-Rule:MF_01600}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
hypothetical protein
L1_008_000M1_scaffold_43_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29612..30898
DNA (1287bp) protein (429aa)
nagZ; beta-hexosaminidase (EC:3.2.1.52)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Beta-hexosaminidase n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MWS9_BIFBI
L1_008_000M1_scaffold_43_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30913..31995)
DNA (1083bp) protein (361aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0T2_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52931.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_43_30
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31992..32813)
DNA (822bp) protein (274aa)
ABC transporter ATP-binding protein (EC:3.6.3.30)
ATP-binding protein of ABC transporter system n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P116_BIFBP
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:CDB22070.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Displaying items 1-30 of 164 in total

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