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L1_008_000M1_scaffold_43

Search features with annotation key words

Displaying items 121-150 of 164 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L1_008_000M1_scaffold_43_121
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(148005..148898)
DNA (894bp) protein (298aa)
nadC; nicotinate-nucleotide pyrophosphorylase NadC (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase {ECO:0000313|EMBL:EKE50543.1}; EC=2.4.2.19 {ECO:0000313|EMBL:EKE50543.1};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Nicotinate-nucleotide pyrophosphorylase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HSX2_BIFBI
L1_008_000M1_scaffold_43_122
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(149096..150745)
DNA (1650bp) protein (550aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L-aspartate oxidase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HVN1_BIFBI
nadB; L-aspartate oxidase
L1_008_000M1_scaffold_43_123
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(150798..152078)
DNA (1281bp) protein (427aa)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00569}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00569};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Quinolinate synthase A n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V8M8_BIFBI
nadA; quinolinate synthetase complex subunit A
L1_008_000M1_scaffold_43_124
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(152196..152978)
DNA (783bp) protein (261aa)
Phosphohydrolase (MutT/nudix family protein) n=6 Tax=Bifidobacterium RepID=E3ENV2_BIFBS
phosphohydrolase
Phosphohydrolase (MutT/nudix family protein) {ECO:0000313|EMBL:ADO52827.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L1_008_000M1_scaffold_43_125
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(153181..153753)
DNA (573bp) protein (191aa)
Segregation and condensation protein B n=3 Tax=Bifidobacterium bifidum RepID=E3ENV1_BIFBS
scpB; segregation and condensation protein ScpB
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_43_126
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(153850..154704)
DNA (855bp) protein (285aa)
Segregation and condensation protein A n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HSW7_BIFBI
Segregation and condensation protein A {ECO:0000313|EMBL:EKE50538.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
scpA; segregation and condensation protein A
L1_008_000M1_scaffold_43_127
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(154741..155760)
DNA (1020bp) protein (340aa)
Chromosome partitioning protein n=5 Tax=Bifidobacterium bifidum RepID=E3ENU9_BIFBS
chromosome partitioning protein
ParA Chromosome partitioning protein {ECO:0000313|EMBL:KFI42666.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_43_128
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(155822..156790)
DNA (969bp) protein (323aa)
Tyrosine recombinase XerD n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2H956_BIFBI
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
integrase/recombinase
L1_008_000M1_scaffold_43_129
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(156939..157322)
DNA (384bp) protein (128aa)
50S ribosomal protein L20 n=8 Tax=Bifidobacterium RepID=E3ENU7_BIFBS
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_43_130
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(157370..157564)
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=8 Tax=Bifidobacterium RepID=E3ENU6_BIFBS
rpmI; 50S ribosomal protein L35
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L1_008_000M1_scaffold_43_131
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(157583..158314)
DNA (732bp) protein (244aa)
Translation initiation factor IF-3 n=9 Tax=Bifidobacterium RepID=E3ENU5_BIFBS
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
infC; protein translation Initiation Factor 3
L1_008_000M1_scaffold_43_132
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(158655..158840)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WH03_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04166.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_43_133
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

158949..159677
DNA (729bp) protein (243aa)
Thiamin pyrophosphokinase n=3 Tax=Bifidobacterium bifidum RepID=E3ENU3_BIFBS
thiamin pyrophosphokinase
Thiamine diphosphokinase {ECO:0000313|EMBL:ERI83056.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ97788.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_43_134
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

159884..160939
DNA (1056bp) protein (352aa)
gap; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Gap Glyceraldehyde 3-phosphate dehydrogenase n=6 Tax=Bifidobacterium RepID=E3ENU2_BIFBS
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000313|EMBL:EKE50527.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L1_008_000M1_scaffold_43_135
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(161078..161515)
DNA (438bp) protein (146aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=2 Tax=Bifidobacterium bifidum RepID=E4V8L6_BIFBI
YbaK / prolyl-tRNA synthetases associated domain
L1_008_000M1_scaffold_43_136
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(162017..163006)
DNA (990bp) protein (330aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2IP46_BIFBI
L1_008_000M1_scaffold_43_137
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

163237..164193
DNA (957bp) protein (319aa)
Putative galactose mutarotase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I6L6_BIFBI
galM; putative galactose mutarotase
Putative galactose mutarotase {ECO:0000313|EMBL:EKE50524.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L1_008_000M1_scaffold_43_138
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(164568..164936)
DNA (369bp) protein (123aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=I3WGZ5_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42654.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_43_139
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(164929..165570)
DNA (642bp) protein (214aa)
RNA polymerase ECF-type sigma factor n=3 Tax=Bifidobacterium RepID=E3ENT6_BIFBS
rpoE; RNA polymerase sigma-E factor
SigH RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:KFI42653.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L1_008_000M1_scaffold_43_140
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

165710..167341
DNA (1632bp) protein (544aa)
UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|SAAS:SAAS00085409}; EC=6.3.2.- {ECO:0000256|SAAS:SAAS00276926};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase n=3 Tax=Bifidobacterium bifidum RepID=U2DNA8_BIFBI
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-lysine ligase
L1_008_000M1_scaffold_43_141
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

167386..168384
DNA (999bp) protein (333aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4V8K8_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR49950.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
cell wall biosynthesis-associated protein
L1_008_000M1_scaffold_43_142
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(168463..169668)
DNA (1206bp) protein (402aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MV66_BIFBI
DegT/DnrJ/EryC1/StrS aminotransferase family protein {ECO:0000313|EMBL:ERI83045.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ97777.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L1_008_000M1_scaffold_43_143
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

169847..171082
DNA (1236bp) protein (412aa)
Putative uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E3ENT2_BIFBS
putative ATP-grasp enzyme
Putative ATP-grasp enzyme {ECO:0000313|EMBL:AFL04152.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_43_144
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

171141..171833
DNA (693bp) protein (231aa)
racD; aspartate racemase (EC:5.1.1.13)
Aspartate racemase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2H933_BIFBI
Aspartate racemase {ECO:0000313|EMBL:EKF15940.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L1_008_000M1_scaffold_43_145
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(172009..175671)
DNA (3663bp) protein (1221aa)
Chromosome partition protein Smc n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WGY7_BIFBI
smc; chromosome segregation protein
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L1_008_000M1_scaffold_43_146
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(175677..177317)
DNA (1641bp) protein (547aa)
folC; folylpolyglutamate synthase (EC:6.3.2.17)
Bifunctional protein FolC n=3 Tax=Bifidobacterium RepID=E4V8K3_BIFBI
Folylpolyglutamate synthase {ECO:0000313|EMBL:BAQ97773.1}; Protein FolC {ECO:0000313|EMBL:ERI83040.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_43_147
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

177591..177692
DNA (102bp) protein (34aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=K2HSU0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAQ97772.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L1_008_000M1_scaffold_43_148
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(177874..178395)
DNA (522bp) protein (174aa)
Hydrolase, NUDIX family n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CFC4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:BAQ97771.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
phosphohydrolase
L1_008_000M1_scaffold_43_149
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(178468..180066)
DNA (1599bp) protein (533aa)
Xaa-Pro aminopeptidase n=3 Tax=Bifidobacterium RepID=E3ENS6_BIFBS
pepP; Xaa-Pro aminopeptidase
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:CDB22687.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L1_008_000M1_scaffold_43_150
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(180235..181968)
DNA (1734bp) protein (578aa)
Glutathione import ATP-binding protein n=5 Tax=Bifidobacterium RepID=I3WGY3_BIFBI
Glutathione import ATP-binding protein {ECO:0000313|EMBL:AFL04146.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
gsiA; glutathione import ATP-binding protein
Displaying items 121-150 of 164 in total

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