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NECEvent2014_2_3_scaffold_164

Alias: 172_003_scaffold_164

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_164_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(95..1132)
DNA (1038bp) protein (346aa)
Exonuclease n=3 Tax=Clostridium difficile RepID=G6BZE0_CLODI rbh
exonuclease
Putative exonuclease {ECO:0000313|EMBL:CBE05490.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile
NECEvent2014_2_3_scaffold_164_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1171..2031)
DNA (861bp) protein (287aa)
PP-loop family protein n=183 Tax=Clostridium difficile RepID=T3GJH5_CLODC rbh
putative 2-thiocytidine tRNA biosynthesisprotein TtcA
PP-loop family protein {ECO:0000313|EMBL:EQH98604.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_164_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2300..2509
DNA (210bp) protein (70aa)
Uncharacterized protein n=195 Tax=Clostridium difficile RepID=C9XLI0_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCK98808.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_164_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2509..2775
DNA (267bp) protein (89aa)
Spore coat peptide assembly protein CotJB 2 n=205 Tax=Clostridium difficile RepID=Q181Y6_CLOD6
spore-coat protein
CotJB family protein {ECO:0000313|EMBL:EQE60926.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficil
NECEvent2014_2_3_scaffold_164_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2804..3376
DNA (573bp) protein (191aa)
Spore coat peptide assembly protein CotJC 2 n=215 Tax=Clostridium difficile RepID=Q181Y5_CLOD6 rbh
spore-coat protein
Spore coat peptide assembly protein CotJC 2 {ECO:0000313|EMBL:CCL30634.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pe
NECEvent2014_2_3_scaffold_164_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3611..4801)
DNA (1191bp) protein (397aa)
cell wall hydrolase (EC:3.4.-.-)
Putative cell wall hydrolase phosphatase-associated protein {ECO:0000313|EMBL:CCL22733.1}; EC=3.4.-.- {ECO:0000313|EMBL:CCL22733.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridi
Bacteriophage peptidoglycan hydrolase family protein n=98 Tax=Clostridium difficile RepID=T3GJG4_CLODC rbh
NECEvent2014_2_3_scaffold_164_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5061..5492)
DNA (432bp) protein (144aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=206 Tax=Clostridium difficile RepID=DUT_CLOD6
dut; deoxyuridine 5'-triphosphate nucleotidohydrolase
NECEvent2014_2_3_scaffold_164_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5605..7833
DNA (2229bp) protein (743aa)
DNA topoisomerase type IA {ECO:0000313|EMBL:CAJ69289.1}; EC=5.99.1.2 {ECO:0000313|EMBL:CAJ69289.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Pepto
DNA topoisomerase type IA (EC:5.99.1.2)
DNA topoisomerase n=27 Tax=Clostridium difficile RepID=T3GFH8_CLODC rbh
NECEvent2014_2_3_scaffold_164_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7944..8429)
DNA (486bp) protein (162aa)
MarR family protein n=205 Tax=Clostridium difficile RepID=C9XLI6_CLODC rbh
MarR family transcriptional regulator
MarR family protein {ECO:0000313|EMBL:EQE60994.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile
NECEvent2014_2_3_scaffold_164_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8681..9904
DNA (1224bp) protein (408aa)
Efflux transporter, RND family, MFP subunit n=119 Tax=Clostridium difficile RepID=T3GFG2_CLODC rbh
putative lipoprotein
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EQH98611.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pe
NECEvent2014_2_3_scaffold_164_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9908..13042
DNA (3135bp) protein (1045aa)
Putative multidrug efflux pump n=2 Tax=Clostridium difficile RepID=U3WC04_CLODI rbh
Putative multidrug efflux pump {ECO:0000313|EMBL:CAJ69292.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
multidrug efflux pump
NECEvent2014_2_3_scaffold_164_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13076..14374
DNA (1299bp) protein (433aa)
Outer membrane efflux family protein n=58 Tax=Clostridium difficile RepID=T3GIT8_CLODC rbh
putative multidrug efflux pump
Multidrug efflux pump%2C outer membrane protein {ECO:0000313|EMBL:CKH31337.1}; Putative multidrug efflux pump {ECO:0000313|EMBL:CEJ99026.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clost
NECEvent2014_2_3_scaffold_164_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14663..14908)
DNA (246bp) protein (82aa)
Double zinc ribbon family protein n=163 Tax=Clostridium difficile RepID=T3GJF3_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ69294.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_164_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15122..17749)
DNA (2628bp) protein (876aa)
Pyruvate phosphate dikinase {ECO:0000313|EMBL:CKH31398.1}; EC=2.7.9.1 {ECO:0000313|EMBL:CKH31398.1};; Pyruvate phosphate dikinase(ATP:pyruvate,phosphate phosphotransferase) {ECO:0000313|EMBL:CEJ99028.
ppdK; Pyruvate phosphate dikinase(ATP:pyruvate,phosphate phosphotransferase) (EC:2.7.9.1)
Pyruvate phosphate dikinase (ATP:pyruvate,phosphate phosphotransferase) n=4 Tax=Clostridium difficile RepID=Q181Z4_CLOD6 rbh
NECEvent2014_2_3_scaffold_164_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17810..18646)
DNA (837bp) protein (279aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00
Putative pyruvate, phosphate dikinase regulatory protein n=161 Tax=Clostridium difficile RepID=T3GFH4_CLODC rbh
hypothetical protein
NECEvent2014_2_3_scaffold_164_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18659..19297)
DNA (639bp) protein (213aa)
Uncharacterized protein n=209 Tax=Clostridium difficile RepID=C9XLJ4_CLODC rbh
hypothetical protein
Putative negative regulator of gluconeogenesis {ECO:0000313|EMBL:CCL22743.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source=
NECEvent2014_2_3_scaffold_164_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19733..21025)
DNA (1293bp) protein (431aa)
Uncharacterized protein n=136 Tax=Clostridium difficile RepID=C9XLJ5_CLODC rbh
hypothetical protein
Predicted homoserine dehydrogenase {ECO:0000313|EMBL:CKH31493.1}; Putative NAD(P)-binding protein {ECO:0000313|EMBL:CEJ99031.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pe
NECEvent2014_2_3_scaffold_164_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21062..21418)
DNA (357bp) protein (119aa)
PTS system, Sorbitol-like IIA component (Glucitol) {ECO:0000313|EMBL:CCL22745.1}; EC=2.7.1.- {ECO:0000313|EMBL:CCL22745.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pep
PTS system glucitol/sorbitol-specific IIA component family protein n=211 Tax=Clostridium difficile RepID=C9XLJ6_CLODC
srlB; PTS system transporter subunit IIA
NECEvent2014_2_3_scaffold_164_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21453..21812)
DNA (360bp) protein (120aa)
Glucitol operon activator family protein n=142 Tax=Clostridium difficile RepID=C9XLJ7_CLODC
hypothetical protein
Putative sorbitol-like operon activator protein (Glucitol) {ECO:0000313|EMBL:CCL30648.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridiu
NECEvent2014_2_3_scaffold_164_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21881..23854)
DNA (1974bp) protein (658aa)
Transcription antiterminator, PTS operon regulator n=119 Tax=Clostridium difficile RepID=Q181Z9_CLOD6 rbh
PRD domain protein {ECO:0000313|EMBL:EQH98620.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile
Transcription antiterminator, PTS operonregulator
NECEvent2014_2_3_scaffold_164_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24076..25089)
DNA (1014bp) protein (338aa)
PTS system, Sorbitol-like IIB component (Glucitol) {ECO:0000313|EMBL:CCL22748.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CCL22748.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pe
PTS system, glucitol/sorbitol-specific IIbc component n=197 Tax=Clostridium difficile RepID=C9XLJ9_CLODC rbh
PTS system glucitol/sorbitol-specific transporter subunit IIBC
NECEvent2014_2_3_scaffold_164_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25102..25647)
DNA (546bp) protein (182aa)
Glucitol/sorbitol permease IIC component n=206 Tax=Clostridium difficile RepID=C9XLK0_CLODC rbh
PTS system glucitol/sorbitol-specific transporter subunit IIC2
Glucitol/sorbitol-specific enzyme IIC component of PTS {ECO:0000313|EMBL:CDS87968.1}; PTS system glucitol/sorbitol-specific transporter subunit IIC2 {ECO:0000313|EMBL:CKH31677.1}; PTS system, Sorbitol
NECEvent2014_2_3_scaffold_164_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26023..26892)
DNA (870bp) protein (290aa)
Bacterial regulatory helix-turn-helix s, AraC family protein n=57 Tax=Clostridium difficile RepID=T3GED5_CLODC rbh
Transcriptional regulator, AraC family
AraC-family transcriptional regulator {ECO:0000313|EMBL:CKH31715.1}; Transcriptional regulator, AraC family {ECO:0000313|EMBL:CEJ99037.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostri
NECEvent2014_2_3_scaffold_164_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27044..28159)
DNA (1116bp) protein (372aa)
6-aminopenicillanic acid acyl-transferase family protein n=26 Tax=Clostridium difficile RepID=T3GIP6_CLODC rbh
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ69305.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_164_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28395..29531)
DNA (1137bp) protein (379aa)
Putative amidohydrolase, M20D family {ECO:0000313|EMBL:CCL22754.1}; EC=3.5.1.- {ECO:0000313|EMBL:CCL22754.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococca
Amidohydrolase family protein n=198 Tax=Clostridium difficile RepID=C9XLK3_CLODC rbh
peptidase
NECEvent2014_2_3_scaffold_164_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29587..31050)
DNA (1464bp) protein (488aa)
Sodium:alanine symporter n=80 Tax=Clostridium difficile RepID=Q182A8_CLOD6 rbh
Sodium:alanine symporter
Sodium/proton-dependent alanine carrier protein {ECO:0000313|EMBL:CKH31797.1}; Sodium:alanine symporter {ECO:0000313|EMBL:CEJ99040.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridial
Displaying 26 items

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