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NECEvent2014_6_7_Clostridium_paraputrificum_30_154

NECEvent2014_6_7_Clostridium_30_158
In projects: NECEvent2014_6_7

Consensus taxonomy: Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Description

ESOM refined - nice! Identical gyrA in infant 178

Displaying items 51-100 of 168 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_6_7_scaffold_465 176_007_scaffold_465
Genus: Clostridium (70.83%)
24 24045 bp 28.53 148.70 91.50
NECEvent2014_6_7_scaffold_240 176_007_scaffold_240
Genus: Clostridium (90.48%)
42 40692 bp 29.24 147.71 91.49
NECEvent2014_6_7_scaffold_1583 176_007_scaffold_1583 4 5331 bp 26.45 132.58 91.33
NECEvent2014_6_7_scaffold_292 176_007_scaffold_292
Genus: Clostridium (90%)
40 35295 bp 28.29 152.09 91.31
NECEvent2014_6_7_scaffold_277 176_007_scaffold_277
Genus: Clostridium (85.29%)
34 36855 bp 29.47 139.40 91.30
NECEvent2014_6_7_scaffold_789 176_007_scaffold_789
Genus: Clostridium (77.78%)
9 12880 bp 28.76 133.91 91.19
NECEvent2014_6_7_scaffold_263 176_007_scaffold_263
Genus: Clostridium (83.67%)
49 46791 bp 29.55 157.56 91.08
NECEvent2014_6_7_scaffold_162 176_007_scaffold_162
Genus: Clostridium (88.37%)
43 53967 bp 31.12 155.19 90.98
NECEvent2014_6_7_scaffold_5519 176_007_scaffold_5519
Species: Clostridium chauvoei (50%)
2 1227 bp 32.52 178.85 90.95
NECEvent2014_6_7_scaffold_664 176_007_scaffold_664
Genus: Clostridium (100%)
15 16792 bp 30.83 183.52 90.90
NECEvent2014_6_7_scaffold_262 176_007_scaffold_262
Genus: Clostridium (94.74%)
38 38857 bp 29.41 164.38 90.85
NECEvent2014_6_7_scaffold_117 176_007_scaffold_117
Genus: Clostridium (78.33%)
60 63912 bp 28.94 141.91 90.81
NECEvent2014_6_7_scaffold_836 176_007_scaffold_836
Genus: Clostridium (78.57%)
14 11823 bp 29.54 163.88 90.71
NECEvent2014_6_7_scaffold_4227 176_007_scaffold_4227
Species: Clostridium colicanis (50%)
4 1915 bp 26.16 129.40 90.71
NECEvent2014_6_7_scaffold_371 176_007_scaffold_371
Genus: Clostridium (56.67%)
30 28752 bp 29.73 154.84 90.65
NECEvent2014_6_7_scaffold_4811 176_007_scaffold_4811
Genus: Clostridium (100%)
3 1447 bp 28.82 156.43 90.60
NECEvent2014_6_7_scaffold_209 176_007_scaffold_209
Genus: Clostridium (90.48%)
42 45988 bp 28.78 151.70 90.55
NECEvent2014_6_7_scaffold_769 176_007_scaffold_769
Genus: Clostridium (80%)
25 24675 bp 29.41 141.46 90.47
NECEvent2014_6_7_scaffold_182 176_007_scaffold_182
Genus: Clostridium (80%)
40 49330 bp 28.77 163.90 90.41
NECEvent2014_6_7_scaffold_502 176_007_scaffold_502
Genus: Clostridium (80%)
25 22775 bp 30.20 172.43 90.39
NECEvent2014_6_7_scaffold_195 176_007_scaffold_195
Genus: Clostridium (71.11%)
45 52439 bp 29.74 161.87 90.33
NECEvent2014_6_7_scaffold_602 176_007_scaffold_602
Genus: Clostridium (75%)
16 19055 bp 30.87 185.64 90.27
NECEvent2014_6_7_scaffold_2224 176_007_scaffold_2224
Species: Peptoclostridium difficile (50%)
4 3555 bp 30.21 128.35 90.13
NECEvent2014_6_7_scaffold_544 176_007_scaffold_544
Genus: Clostridium (71.43%)
21 21121 bp 28.71 132.80 89.97
NECEvent2014_6_7_scaffold_46 176_007_scaffold_46
Genus: Clostridium (90.91%)
77 91652 bp 30.49 186.79 89.94
NECEvent2014_6_7_scaffold_594 176_007_scaffold_594
Genus: Clostridium (52.17%)
23 19276 bp 29.33 130.45 89.91
NECEvent2014_6_7_scaffold_674 176_007_scaffold_674
Genus: Clostridium (90.48%)
21 22545 bp 30.84 154.21 89.81
NECEvent2014_6_7_scaffold_221 176_007_scaffold_221
Genus: Clostridium (94.12%)
85 76242 bp 31.33 180.01 89.73
NECEvent2014_6_7_scaffold_257 176_007_scaffold_257
Genus: Clostridium (80.56%)
36 39303 bp 28.14 178.76 89.69
NECEvent2014_6_7_scaffold_1030 176_007_scaffold_1030
Genus: Clostridium (100%)
5 8963 bp 29.28 179.32 89.67
NECEvent2014_6_7_scaffold_423 176_007_scaffold_423
Genus: Clostridium (85.19%)
27 26218 bp 29.64 145.43 89.59
NECEvent2014_6_7_scaffold_419 176_007_scaffold_419
Genus: Clostridium (80.56%)
36 36059 bp 29.49 154.89 89.59
NECEvent2014_6_7_scaffold_2702 176_007_scaffold_2702 3 2800 bp 29.82 136.61 89.57
NECEvent2014_6_7_scaffold_344 176_007_scaffold_344
Genus: Clostridium (90.48%)
21 29780 bp 30.27 183.21 89.57
NECEvent2014_6_7_scaffold_382 176_007_scaffold_382
Genus: Clostridium (88.57%)
35 28220 bp 29.89 179.02 89.33
NECEvent2014_6_7_scaffold_1079 176_007_scaffold_1079
Genus: Clostridium (100%)
9 8414 bp 28.76 159.04 89.32
NECEvent2014_6_7_scaffold_3299 176_007_scaffold_3299
Species: Clostridium butyricum (100%)
1 2225 bp 31.91 169.96 89.26
NECEvent2014_6_7_scaffold_203 176_007_scaffold_203
Genus: Clostridium (91.49%)
47 46591 bp 30.50 171.89 89.23
NECEvent2014_6_7_scaffold_431 176_007_scaffold_431
Genus: Clostridium (89.29%)
28 25761 bp 30.23 183.94 89.11
NECEvent2014_6_7_scaffold_532 176_007_scaffold_532
Genus: Clostridium (100%)
21 21610 bp 28.36 175.13 89.04
NECEvent2014_6_7_scaffold_571 176_007_scaffold_571
Genus: Clostridium (96.97%)
33 33983 bp 31.15 166.54 89.04
NECEvent2014_6_7_scaffold_731 176_007_scaffold_731
Genus: Clostridium (92.31%)
13 14769 bp 34.47 193.65 88.95
NECEvent2014_6_7_scaffold_425 176_007_scaffold_425
Genus: Clostridium (79.31%)
29 26139 bp 28.59 184.81 88.88
NECEvent2014_6_7_scaffold_819 176_007_scaffold_819
Genus: Clostridium (73.33%)
15 12139 bp 30.89 138.22 88.82
NECEvent2014_6_7_scaffold_1569 176_007_scaffold_1569
Genus: Clostridium (60%)
5 5555 bp 29.49 146.25 88.78
NECEvent2014_6_7_scaffold_107 176_007_scaffold_107
Genus: Clostridium (86.92%)
107 115710 bp 29.76 163.93 88.71
NECEvent2014_6_7_scaffold_726 176_007_scaffold_726
Genus: Clostridium (92.86%)
14 14920 bp 28.42 154.79 88.61
NECEvent2014_6_7_scaffold_510 176_007_scaffold_510
Genus: Clostridium (80.43%)
46 43146 bp 30.90 147.41 88.58
NECEvent2014_6_7_scaffold_1805 176_007_scaffold_1805
Genus: Clostridium (83.33%)
6 4590 bp 28.37 159.41 88.43
NECEvent2014_6_7_scaffold_4398 176_007_scaffold_4398
Species: Clostridium sp. IBUN13A (100%)
2 1598 bp 25.97 130.29 88.42
Displaying items 51-100 of 168 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.