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PLM1_60_b1_redo_sep16_scaffold_15

Search features with annotation key words

Displaying items 61-90 of 147 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_15_61
unknown

Not on your lists

63105..63773
DNA (669bp) protein (223aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_15_62
Synechococcus sp. WH 7805, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(63915..68702)
DNA (4788bp) protein (1596aa)
Ferredoxin-dependent glutamate synthase, Fd-GOGAT Tax=Synechococcus sp. (strain WH7805) RepID=A4CSR9_SYNPV
Ferredoxin-dependent glutamate synthase, Fd-GOGAT {ECO:0000313|EMBL:EAR19133.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. (strain WH7805).;"
ferredoxin-dependent glutamate synthase
PLM1_60_b1_redo_sep16_scaffold_15_63
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

68980..70068
DNA (1089bp) protein (363aa)
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM1_60_b1_redo_sep16_scaffold_15_64
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

70200..70601
DNA (402bp) protein (134aa)
Copper-binding protein Tax=Marinobacter nanhaiticus D15-8W RepID=N6WXZ2_9ALTE
copper-binding protein
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM1_60_b1_redo_sep16_scaffold_15_65
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

70691..72148
DNA (1458bp) protein (486aa)
Signal transduction histidine kinase Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LSC2_ACIC1
signal transduction histidine kinase
Signal transduction histidine kinase {ECO:0000313|EMBL:ABK52332.1}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM1_60_b1_redo_sep16_scaffold_15_66
unknown

Not on your lists

72241..72471
DNA (231bp) protein (77aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_15_67
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(72603..74390)
DNA (1788bp) protein (596aa)
Peptidase S9 prolyl oligopeptidase active site domain protein Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A8A0_THECD
peptidase S9 prolyl oligopeptidase active site domain-containing protein
Peptidase S9 prolyl oligopeptidase active site domain protein {ECO:0000313|EMBL:ACZ00415.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM1_60_b1_redo_sep16_scaffold_15_68
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(74732..76168)
DNA (1437bp) protein (479aa)
Putative uncharacterized protein bin=GWD2_Desulfuromonadales_54_10 species=Cellulomonas fimi genus=Cellulomonas taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:AEE47450.1}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
PLM1_60_b1_redo_sep16_scaffold_15_69
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(76432..76647)
DNA (216bp) protein (72aa)
Dyp-type peroxidase family Tax=Pseudomonas fluorescens WH6 RepID=E2XSW8_PSEFL
Ferrous iron transport peroxidase EfeB
Dyp-type peroxidase family {ECO:0000313|EMBL:EFQ63432.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens WH6.;"
PLM1_60_b1_redo_sep16_scaffold_15_70
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

76957..77499
DNA (543bp) protein (181aa)
RNA polymerase sigma factor Tax=Micromonospora lupini str. Lupac 08 RepID=I0L563_9ACTO
putative RNA polymerase ECF-subfamily sigma factor
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM1_60_b1_redo_sep16_scaffold_15_71
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

77496..78350
DNA (855bp) protein (285aa)
Uncharacterized protein Tax=Micromonospora sp. (strain L5) RepID=E8S154_MICSL
hypothetical protein
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM1_60_b1_redo_sep16_scaffold_15_72
Streptomyces bottropensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(78347..79384)
DNA (1038bp) protein (346aa)
Dihydrolipoyllysine-residue succinyltransferase Tax=Streptomyces bottropensis ATCC 25435 RepID=M3F1X2_9ACTO
Dihydrolipoyllysine-residue succinyltransferase {ECO:0000313|EMBL:EMF55528.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bottropensis ATCC 25435.;"
sucB; dihydrolipoamide S-succinyltransferase
PLM1_60_b1_redo_sep16_scaffold_15_73
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79398..81434)
DNA (2037bp) protein (679aa)
Putative uncharacterized protein Tax=Gordonia effusa NBRC 100432 RepID=H0R2E6_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KIO48346.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Peptidase M64, IgA
PLM1_60_b1_redo_sep16_scaffold_15_74
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(81746..83323)
DNA (1578bp) protein (526aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;"
Argininosuccinate lyase Tax=Frankia sp. CN3 RepID=G6HPC2_9ACTO
argininosuccinate lyase
PLM1_60_b1_redo_sep16_scaffold_15_75
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(83316..84536)
DNA (1221bp) protein (407aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter subterraneus DSM 13965.;"
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PZQ5_9FIRM
PLM1_60_b1_redo_sep16_scaffold_15_76
Tsukamurella paurometabola, Tsukamurella, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(84533..85063)
DNA (531bp) protein (177aa)
Arginine repressor Tax=Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040) RepID=D5UR15_TSUPD
arginine repressor ArgR
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; species="Bacteria; Actinobacteria; Corynebacteriales; Tsukamurellaceae; Tsukamurella.;" source="Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 /; NBRC 16120 / NCTC 13040) (Corynebacterium paurometabolum).;"
PLM1_60_b1_redo_sep16_scaffold_15_77
Streptomyces fradiae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(85054..86268)
DNA (1215bp) protein (405aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fradiae (Streptomyces roseoflavus).;"
Acetylornithine aminotransferase Tax=Streptomyces violaceusniger Tu 4113 RepID=G2PDP6_STRVO
acetylornithine/succinyldiaminopimelate aminotransferase
PLM1_60_b1_redo_sep16_scaffold_15_78
unknown

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comp(86265..86387)
DNA (123bp) protein (41aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_15_79
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(86384..87325)
DNA (942bp) protein (314aa)
argB; acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245383};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
Acetylglutamate kinase Tax=Ilumatobacter coccineus YM16-304 RepID=M5A1J5_9ACTN
PLM1_60_b1_redo_sep16_scaffold_15_80
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(87322..88959)
DNA (1638bp) protein (546aa)
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1)
Arginine biosynthesis bifunctional protein ArgJ Tax=Pedosphaera parvula Ellin514 RepID=B9XQ46_9BACT
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
PLM1_60_b1_redo_sep16_scaffold_15_81
uncultured Verrucomicrobiales bacterium HF0070_30L02, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(89012..90058)
DNA (1047bp) protein (349aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; environmental samples.;" source="uncultured Verrucomicrobiales bacterium HF0070_30L02.;"
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase Tax=Bacteria RepID=E0XSC3_9ACTN
PLM1_60_b1_redo_sep16_scaffold_15_82
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

90405..91676
DNA (1272bp) protein (424aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
Diaminopimelate decarboxylase Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UIT9_MYXSD
diaminopimelate decarboxylase
PLM1_60_b1_redo_sep16_scaffold_15_83
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

91809..92990
DNA (1182bp) protein (394aa)
hypothetical protein Tax=Nocardiopsis chromatogenes RepID=UPI0003632283
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EWT06856.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
ABC transporter
PLM1_60_b1_redo_sep16_scaffold_15_84
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(93273..93884)
DNA (612bp) protein (204aa)
Scramblase Tax=Frankia sp. QA3 RepID=I8ZW55_9ACTO
Scramblase {ECO:0000313|EMBL:EIV91286.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
scramblase family protein
PLM1_60_b1_redo_sep16_scaffold_15_85
unknown

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comp(94491..94643)
DNA (153bp) protein (51aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_15_86
Streptomyces olindensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(94782..95657)
DNA (876bp) protein (292aa)
alpha/beta hydrolase Tax=Streptomyces sp. R1-NS-10 RepID=UPI00036E266A
Alpha/beta hydrolase {ECO:0000313|EMBL:KDN79460.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces olindensis.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_15_87
unknown

Not on your lists

96015..97238
DNA (1224bp) protein (408aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_15_88
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

97609..103644
DNA (6036bp) protein (2012aa)
YD repeat protein Tax=Frankia sp. EUN1f RepID=D3CYZ8_9ACTO
RHS repeat-associated core domain {ECO:0000313|EMBL:KJE21584.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
YD repeat-containing protein
PLM1_60_b1_redo_sep16_scaffold_15_89
unknown

Not on your lists

103826..103963
DNA (138bp) protein (46aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_15_90
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

104832..105194
DNA (363bp) protein (121aa)
hypothetical protein Tax=Nocardiopsis salina RepID=UPI00034BF634
Phage integrase
Phage integrase {ECO:0000313|EMBL:CCG02713.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
Displaying items 61-90 of 147 in total

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