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PLM1_60_b1_redo_sep16_scaffold_998

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_998_1
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..220)
DNA (219bp) protein (73aa)
hypothetical protein Tax=Longispora albida RepID=UPI000373D009
H+transporting two-sector ATPase subunit C
H+transporting two-sector ATPase C subunit {ECO:0000313|EMBL:ADD41020.1}; species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
PLM1_60_b1_redo_sep16_scaffold_998_2
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(302..1093)
DNA (792bp) protein (264aa)
ATP synthase subunit a Tax=Verrucosispora maris (strain AB-18-032) RepID=F4F818_VERMA
ATP synthase F0 subunit A
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
PLM1_60_b1_redo_sep16_scaffold_998_3
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1155..1373)
DNA (219bp) protein (73aa)
Uncharacterized protein Tax=Micromonospora lupini str. Lupac 08 RepID=I0LB29_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:CCH21026.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_998_4
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1408..1824)
DNA (417bp) protein (139aa)
Uncharacterized protein Tax=Micromonospora lupini str. Lupac 08 RepID=I0LB30_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:CCH21027.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_998_5
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1832..3094)
DNA (1263bp) protein (421aa)
glycine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
Serine hydroxymethyltransferase Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8B5Y8_FRADG
PLM1_60_b1_redo_sep16_scaffold_998_6
Frankia sp. CcI3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3091..4644)
DNA (1554bp) protein (518aa)
Putative uncharacterized protein Tax=Frankia sp. (strain CcI3) RepID=Q2J8W9_FRASC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD12273.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain CcI3).;"
PLM1_60_b1_redo_sep16_scaffold_998_7
BJP_IG2157_Actinomycetales_63_19, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(4737..5282)
DNA (546bp) protein (182aa)
hypothetical protein Tax=Paenibacillus sp. PAMC 26794 RepID=UPI0003187548
RNA 2'-phosphotransferase
Tax=BJP_IG2157_Actinomycetales_63_19
PLM1_60_b1_redo_sep16_scaffold_998_8
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5338..5931)
DNA (594bp) protein (198aa)
Phosphotyrosine protein phosphatase Tax=Micromonospora sp. ATCC 39149 RepID=C4RQ86_9ACTO
Phosphotyrosine protein phosphatase {ECO:0000313|EMBL:EEP71426.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
protein tyrosine phosphatase
PLM1_60_b1_redo_sep16_scaffold_998_9
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5928..6593)
DNA (666bp) protein (222aa)
Translation factor SUA5 Tax=Micromonospora lupini str. Lupac 08 RepID=I0LB35_9ACTO
Translation factor SUA5 {ECO:0000313|EMBL:CCH21032.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
translation factor
PLM1_60_b1_redo_sep16_scaffold_998_10
Modestobacter sp. KNN45-2b, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6640..7494)
DNA (855bp) protein (285aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter sp. KNN45-2b.;"
Release factor glutamine methyltransferase Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SES4_GEOOG
protein-(glutamine-N5) methyltransferase, release factor-specific
PLM1_60_b1_redo_sep16_scaffold_998_11
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7700..8782)
DNA (1083bp) protein (361aa)
Peptide chain release factor 1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RQ90_9ACTO
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
peptide chain release factor 1
PLM1_60_b1_redo_sep16_scaffold_998_12
Intrasporangium calvum, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(8895..9128)
DNA (234bp) protein (78aa)
50S ribosomal protein L31 Tax=Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7 KIP) RepID=E6S6G7_INTC7
50S ribosomal protein L31
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 /; NBRC 12989 / 7 KIP).;"
PLM1_60_b1_redo_sep16_scaffold_998_13
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9290..11407)
DNA (2118bp) protein (706aa)
rho; transcription termination factor rho (EC:3.6.1.-)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
Transcription termination factor Rho Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RJ19_BLASD
PLM1_60_b1_redo_sep16_scaffold_998_14
Streptomyces pristinaespiralis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11771..12664)
DNA (894bp) protein (298aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00080104}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces pristinaespiralis ATCC 25486.;"
Homoserine kinase Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=B5H990_STRPR
homoserine kinase
PLM1_60_b1_redo_sep16_scaffold_998_15
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12671..12823)
DNA (153bp) protein (51aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2MYW8_9ACTO
hypothetical protein
Band 7 protein {ECO:0000313|EMBL:ACU35163.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
PLM1_60_b1_redo_sep16_scaffold_998_16
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12847..14076)
DNA (1230bp) protein (410aa)
hypothetical protein Tax=Longispora albida RepID=UPI0003651B2A
major facilitator transporter
Major facilitator transporter {ECO:0000313|EMBL:AEB47007.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
PLM1_60_b1_redo_sep16_scaffold_998_17
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14193..15248)
DNA (1056bp) protein (352aa)
Threonine synthase {ECO:0000256|PIRNR:PIRNR038945}; EC=4.2.3.1 {ECO:0000256|PIRNR:PIRNR038945};; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
threonine synthase Tax=Sporichthya polymorpha RepID=UPI000370C7B6
threonine synthase
PLM1_60_b1_redo_sep16_scaffold_998_18
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15245..16555)
DNA (1311bp) protein (437aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
Homoserine dehydrogenase Tax=Micromonospora RepID=D9TBW9_MICAI
homoserine dehydrogenase
PLM1_60_b1_redo_sep16_scaffold_998_19
Streptomyces rimosus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16552..17892)
DNA (1341bp) protein (447aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rimosus subsp. rimosus ATCC 10970.;"
diaminopimelate decarboxylase Tax=Streptomyces scabrisporus RepID=UPI000372E7C1
diaminopimelate decarboxylase
PLM1_60_b1_redo_sep16_scaffold_998_20
Mycobacterium chubuense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(17981..19630)
DNA (1650bp) protein (550aa)
arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium chubuense (strain NBB4).;"
Arginine--tRNA ligase Tax=Mycobacterium chubuense (strain NBB4) RepID=I4BML2_MYCCN
PLM1_60_b1_redo_sep16_scaffold_998_21
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19737..20471
DNA (735bp) protein (245aa)
Uncharacterized protein Tax=Micromonospora lupini str. Lupac 08 RepID=I0LB50_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:CCH21047.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_998_22
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20464..21093
DNA (630bp) protein (210aa)
Putative uncharacterized protein Tax=Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 / NBRC 16125 / INA 9442) RepID=D9TBX3_MICAI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL48670.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
PLM1_60_b1_redo_sep16_scaffold_998_23
unknown

Not on your lists

21460..21570
DNA (111bp) protein (37aa)

This feature has no annotations

Displaying 23 items

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