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PLM1_60_b1_redo_sep16_scaffold_78

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_78_1
CSP1_8_Deltaproteobacteria, 43F-1404R, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1067)
DNA (1065bp) protein (355aa)
zinc finger SWIM domain-containing protein bin=bin5_DeltaP species=unknown genus=Magnetococcus taxon_order=Magnetococcales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
zinc finger SWIM domain-containing protein
Tax=CSP1_8_Deltaproteobacteria
PLM1_60_b1_redo_sep16_scaffold_78_2
Frankia sp. BMG5.23, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1484..2023
DNA (540bp) protein (180aa)
hypothetical protein Tax=Amycolatopsis balhimycina RepID=UPI00035DA86B
Uncharacterized protein {ECO:0000313|EMBL:KDA44271.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. BMG5.23.;"
transposase IS4 family protein
PLM1_60_b1_redo_sep16_scaffold_78_3
unknown

Not on your lists

2533..3138
DNA (606bp) protein (202aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_78_4
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3156..4037
DNA (882bp) protein (294aa)
Putative oxidoreductase protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B317_STRRD
Dehydrogenase {ECO:0000313|EMBL:ETK36064.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
oxidoreductase
PLM1_60_b1_redo_sep16_scaffold_78_5
Frankia sp. BMG5.23, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4012..4683)
DNA (672bp) protein (224aa)
Glycosyl transferase, family 25 Tax=Frankia sp. (strain CcI3) RepID=Q2J7R7_FRASC
glycosyl transferase
Glycosyltransferase involved in LPS biosynthesis {ECO:0000313|EMBL:KDA41229.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. BMG5.23.;"
PLM1_60_b1_redo_sep16_scaffold_78_6
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4902..5576
DNA (675bp) protein (225aa)
Uncharacterized protein {ECO:0000313|EMBL:ETK36720.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
PLM1_60_b1_redo_sep16_scaffold_78_7
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5573..9496
DNA (3924bp) protein (1308aa)
WD40 repeat, subgroup Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SB14_GEOOG
WD40 repeat, subgroup {ECO:0000313|EMBL:ADB76049.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_78_8
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9493..9678)
DNA (186bp) protein (62aa)
Putative uncharacterized protein Tax=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) RepID=G8SB31_ACTS5
Uncharacterized protein {ECO:0000313|EMBL:KHD78491.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_78_9
Streptomyces gancidicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9669..10961)
DNA (1293bp) protein (431aa)
Cytochrome P450 107B1 (EC:1.14.-.-)
cytochrome P450 Tax=Streptomyces sp. CNT302 RepID=UPI00036D409D
Cytochrome P450 {ECO:0000313|EMBL:EMF28517.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces gancidicus BKS 13-15.;"
PLM1_60_b1_redo_sep16_scaffold_78_10
unknown

Not on your lists

comp(11750..11860)
DNA (111bp) protein (37aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_78_11
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(11985..12410)
DNA (426bp) protein (142aa)
PilT domain-containing protein bin=GWC2_Chloroflexi_73_18 species=Nocardia brasiliensis genus=Nocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
PilT domain-containing protein
Tax=GWC2_RIF_CHLX_73_18_curated
PLM1_60_b1_redo_sep16_scaffold_78_12
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(12417..12650)
DNA (234bp) protein (78aa)
Uncharacterized protein bin=GWC2_Chloroflexi_73_18 species=Nocardia brasiliensis genus=Nocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
hypothetical protein
Tax=GWC2_RIF_CHLX_73_18_curated
PLM1_60_b1_redo_sep16_scaffold_78_13
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(12697..12900)
DNA (204bp) protein (68aa)
hypothetical protein Tax=Catelliglobosispora koreensis RepID=UPI00036E9D13
multidrug ABC transporter ATPase/permease
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM1_60_b1_redo_sep16_scaffold_78_14
Rhodobacterales bacterium Y4I, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13212..14750
DNA (1539bp) protein (513aa)
subtilisin, serine endopeptidase (EC:3.4.21.62)
Peptidase S8 and S53, subtilisin, kexin, sedolisin, putative Tax=Rhodobacterales bacterium Y4I RepID=B6BAX3_9RHOB
Peptidase S8 and S53, subtilisin, kexin, sedolisin, putative {ECO:0000313|EMBL:EDZ48629.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales.;" source="Rhodobacterales bacterium Y4I.;"
PLM1_60_b1_redo_sep16_scaffold_78_15
unknown

Not on your lists

14747..14980
DNA (234bp) protein (78aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_78_16
unknown

Not on your lists

comp(14967..15242)
DNA (276bp) protein (92aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_78_17
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(15344..18364)
DNA (3021bp) protein (1007aa)
Transcriptional regulator, LuxR family bin=GWC2_Chloroflexi_73_18 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
LuxR family transcriptional regulator
Tax=GWC2_RIF_CHLX_73_18_curated
PLM1_60_b1_redo_sep16_scaffold_78_18
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18581..19258
DNA (678bp) protein (226aa)
RNA polymerase sigma factor Tax=Amycolatopsis mediterranei RepID=D8I877_AMYMU
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EXG79927.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
rpoE; RNA polymerase sigma factor
PLM1_60_b1_redo_sep16_scaffold_78_19
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19378..20523)
DNA (1146bp) protein (382aa)
Putative uncharacterized protein Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A6E5_THECD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY96420.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM1_60_b1_redo_sep16_scaffold_78_20
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

20605..22989
DNA (2385bp) protein (795aa)
putative serine/threonine protein kinase (EC:2.7.11.1)
Putative serine/threonine protein kinase Tax=Azoarcus sp. (strain BH72) RepID=A1KC34_AZOSB
Tax=RBG_16_Chloroflexi_63_12_curated
PLM1_60_b1_redo_sep16_scaffold_78_21
Arthrobacter sp. SPG23, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22986..23915
DNA (930bp) protein (310aa)
Beta-mannanase-like protein Tax=Frankia sp. CN3 RepID=G6HA71_9ACTO
SPG23_c9, whole genome shotgun sequence {ECO:0000313|EMBL:KIS28719.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. SPG23.;"
Beta-mannanase-like protein
PLM1_60_b1_redo_sep16_scaffold_78_22
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23873..25018)
DNA (1146bp) protein (382aa)
Beta-mannanase-like protein Tax=Micromonospora sp. (strain L5) RepID=E8S165_MICSL
beta-mannanase-like protein
Beta-mannanase-like protein {ECO:0000313|EMBL:ADL47163.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
PLM1_60_b1_redo_sep16_scaffold_78_23
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25018..26682)
DNA (1665bp) protein (555aa)
Glycosyl transferase family 2 Tax=Frankia sp. CN3 RepID=G6HA70_9ACTO
family 2 glycosyl transferase protein
Glycosyl transferase family 2 {ECO:0000313|EMBL:ADL47164.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
PLM1_60_b1_redo_sep16_scaffold_78_24
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27206..28816)
DNA (1611bp) protein (537aa)
Probable DNA ligase {ECO:0000256|HAMAP-Rule:MF_00407}; EC=6.5.1.1 {ECO:0000256|HAMAP-Rule:MF_00407};; Polydeoxyribonucleotide synthase [ATP] {ECO:0000256|HAMAP-Rule:MF_00407}; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
hypothetical protein Tax=Actinomadura atramentaria RepID=UPI00037518D7
ATP-dependent DNA ligase I
PLM1_60_b1_redo_sep16_scaffold_78_25
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28955..29338)
DNA (384bp) protein (128aa)
Anti-sigma regulatory factor (Ser/Thr protein kinase) Tax=Frankia sp. QA3 RepID=I8ZWW1_9ACTO
Anti-sigma regulatory factor (Ser/Thr protein kinase) {ECO:0000313|EMBL:KJE22753.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_78_26
unknown

Not on your lists

comp(29431..29706)
DNA (276bp) protein (92aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_78_27
Streptomyces bingchenggensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29728..31419
DNA (1692bp) protein (564aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00035E07D5
putative histidine protein kinase
Putative histidine protein kinase {ECO:0000313|EMBL:ADI09000.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bingchenggensis (strain BCW-1).;"
PLM1_60_b1_redo_sep16_scaffold_78_28
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31813..32298
DNA (486bp) protein (162aa)
Histone family protein DNA-binding protein Tax=Actinoplanes sp. N902-109 RepID=R4LYX5_9ACTO
histone family protein DNA-binding protein
Histone family protein DNA-binding protein {ECO:0000313|EMBL:AGL20445.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
PLM1_60_b1_redo_sep16_scaffold_78_29
Saccharothrix sp. ST-888, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32394..32612)
DNA (219bp) protein (73aa)
cold shock protein Tax=Streptomyces sp. BoleA5 RepID=UPI0003800F58
2-phospho-L-lactate guanylyltransferase {ECO:0000313|EMBL:KJK55114.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix sp. ST-888.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_78_30
Streptomyces cyaneogriseus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32722..33366)
DNA (645bp) protein (215aa)
2-phospho-L-lactate guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_02114}; Short=LP guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_02114};; EC=2.7.7.68 {ECO:0000256|HAMAP-Rule:MF_02114};; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces cyaneogriseus subsp. noncyanogenus.;"
2-phospho-L-lactate guanylyltransferase Tax=Nitrolancetus hollandicus Lb RepID=I4EGC4_9CHLR
2-phospho-L-lactate guanylyltransferase
Displaying items 1-30 of 57 in total

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