ggKbase home page

PLM3_60_coex_sep16_scaffold_1063

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_1063_1
Corynebacterium doosanense, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

556..990
DNA (435bp) protein (145aa)
transposase Tax=Corynebacterium doosanense RepID=UPI00037DF53F
transposase
Transposase {ECO:0000313|EMBL:AIT60035.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium doosanense CAU 212 = DSM 45436.;"
PLM3_60_coex_sep16_scaffold_1063_2
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1062..4283
DNA (3222bp) protein (1074aa)
Beta-phosphoglucomutase hydrolase bin=GWF2_Geobacter_54_21 species=Nitrobacter hamburgensis genus=Nitrobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
Beta-phosphoglucomutase hydrolase
Beta-phosphoglucomutase hydrolase {ECO:0000313|EMBL:ABE64961.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
PLM3_60_coex_sep16_scaffold_1063_3
Kitasatospora griseola, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4280..5077
DNA (798bp) protein (266aa)
Trehalose 6-phosphate phosphatase {ECO:0000256|RuleBase:RU361117}; EC=3.1.3.12 {ECO:0000256|RuleBase:RU361117};; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora griseola (Streptomyces griseolosporeus).;"
trehalose phosphatase Tax=Nocardiopsis alkaliphila RepID=UPI00034C9E8E
trehalose-phosphatase
PLM3_60_coex_sep16_scaffold_1063_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5323..6021
DNA (699bp) protein (233aa)
Beta-lactamase {ECO:0000313|EMBL:AEW03418.1}; EC=3.5.2.6 {ECO:0000313|EMBL:AEW03418.1};; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
beta-lactamase Tax=Streptomyces somaliensis RepID=UPI00029A02F5
Beta-lactamase
PLM3_60_coex_sep16_scaffold_1063_5
Kineococcus radiotolerans, Kineococcus, Kineosporiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6047..6379
DNA (333bp) protein (111aa)
Beta-lactamase Tax=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) RepID=A6W6K0_KINRD
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:ABS02439.1}; species="Bacteria; Actinobacteria; Kineosporiales; Kineosporiaceae; Kineococcus.;" source="Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 /; SRS30216).;"
PLM3_60_coex_sep16_scaffold_1063_6
Pelotomaculum thermopropionicum, Pelotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6410..7402)
DNA (993bp) protein (331aa)
Uncharacterized protein Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5CZI3_PELTS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF60586.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Pelotomaculum.;" source="Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI).;"
PLM3_60_coex_sep16_scaffold_1063_7
unknown

Not on your lists

comp(7529..7756)
DNA (228bp) protein (76aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1063_8
Streptomyces mutabilis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7844..8143)
DNA (300bp) protein (100aa)
Putative transposase Tax=Streptomyces himastatinicus ATCC 53653 RepID=D9WIP1_9ACTO
Transposase {ECO:0000313|EMBL:KFG74375.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces mutabilis.;"
putative IS630 family transposase
PLM3_60_coex_sep16_scaffold_1063_9
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

8242..8742
DNA (501bp) protein (167aa)
Integrase catalytic region Tax=Frankia sp. CN3 RepID=G6HF82_9ACTO
integrase catalytic region
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3_60_coex_sep16_scaffold_1063_10
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8883..10085)
DNA (1203bp) protein (401aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2P5X4_9ACTO
formaldehyde dehydrogenase, glutathione-independent
Formaldehyde dehydrogenase, glutathione-independent {ECO:0000313|EMBL:ADB77514.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
PLM3_60_coex_sep16_scaffold_1063_11
unknown

Not on your lists

comp(10750..10953)
DNA (204bp) protein (68aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1063_12
Arthrobacter sp. 11W110_air, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11252..12082)
DNA (831bp) protein (277aa)
Mobile element protein Tax=Amycolatopsis azurea DSM 43854 RepID=M2QN33_9PSEU
IS2 transposase TnpB {ECO:0000313|EMBL:CEA07380.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. 11W110_air.;"
putative transposase
PLM3_60_coex_sep16_scaffold_1063_13
Salinispora tropica, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12506..14245
DNA (1740bp) protein (580aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440).;"
helicase Tax=Salinispora pacifica RepID=UPI000376332D
recombinase D
PLM3_60_coex_sep16_scaffold_1063_14
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14206..14847
DNA (642bp) protein (214aa)
exodeoxyribonuclease V (EC:3.1.11.5)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
Exodeoxyribonuclease V Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B1Q1_STRRD
PLM3_60_coex_sep16_scaffold_1063_15
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14978..15478)
DNA (501bp) protein (167aa)
Integrase catalytic region Tax=Frankia sp. CN3 RepID=G6H3B5_9ACTO
integrase catalytic subunit
Integrase catalytic region {ECO:0000313|EMBL:ABW12451.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM3_60_coex_sep16_scaffold_1063_16

Not on your lists

comp(15590..16783)
DNA (1194bp) protein (398aa)
RNA-directed DNA polymerase (Reverse transcriptase) Tax=Frankia sp. CN3 RepID=G6HB69_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EKE09254.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
RNA-directed DNA polymerase
PLM3_60_coex_sep16_scaffold_1063_17
unknown

Not on your lists

comp(18026..18166)
DNA (141bp) protein (47aa)

This feature has no annotations

PLM3_60_coex_sep16_scaffold_1063_18
unknown

Not on your lists

comp(18613..18954)
DNA (342bp) protein (114aa)

This feature has no annotations

Displaying 18 items

View Taxonomy