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PLM4_5_b1_sep16_scaffold_4694

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_4694_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

1..795
DNA (795bp) protein (265aa)
Glycosyl transferase family 2 Tax=Pedosphaera parvula Ellin514 RepID=B9XMC4_9BACT
Glycosyl transferase family 2 {ECO:0000313|EMBL:EEF58966.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Glycosyl transferase family 2
PLM4_5_b1_sep16_scaffold_4694_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(874..2157)
DNA (1284bp) protein (428aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XMC3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58965.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
polysaccharide biosynthesis protein
PLM4_5_b1_sep16_scaffold_4694_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(2188..3207)
DNA (1020bp) protein (340aa)
Peptidase dimerisation domain protein Tax=Pedosphaera parvula Ellin514 RepID=B9XMC2_9BACT
Peptidase dimerisation domain protein {ECO:0000313|EMBL:EEF58964.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase
PLM4_5_b1_sep16_scaffold_4694_4
unknown

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comp(3220..3795)
DNA (576bp) protein (192aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_4694_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(3795..4748)
DNA (954bp) protein (318aa)
NAD-dependent epimerase/dehydratase Tax=Pedosphaera parvula Ellin514 RepID=B9XMC1_9BACT
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EEF58963.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
NAD-dependent epimerase/dehydratase
PLM4_5_b1_sep16_scaffold_4694_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(4762..5031)
DNA (270bp) protein (90aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XIA8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60369.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM4_5_b1_sep16_scaffold_4694_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(5076..5558)
DNA (483bp) protein (161aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Tax=Pedosphaera parvula Ellin514 RepID=B9XIA9_9BACT
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
PLM4_5_b1_sep16_scaffold_4694_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(5752..6768)
DNA (1017bp) protein (339aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
dTDP-glucose 4,6-dehydratase Tax=Pedosphaera parvula Ellin514 RepID=B9XHJ9_9BACT
dTDP-glucose 4,6-dehydratase
PLM4_5_b1_sep16_scaffold_4694_9
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(6808..7122)
DNA (315bp) protein (105aa)
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:ACB77267.1}; EC=1.1.1.133 {ECO:0000313|EMBL:ACB77267.1};; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
dTDP-4-dehydrorhamnose reductase Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZZT1_OPITP
PLM4_5_b1_sep16_scaffold_4694_10
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(7147..7689)
DNA (543bp) protein (181aa)
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZZT1_OPITP
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
PLM4_5_b1_sep16_scaffold_4694_11
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7695..8240)
DNA (546bp) protein (182aa)
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:ACX96319.1}; EC=5.1.3.13 {ECO:0000313|EMBL:ACX96319.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
dTDP-4-dehydrorhamnose 3,5-epimerase Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L0U6_HALNC
PLM4_5_b1_sep16_scaffold_4694_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(8439..9014)
DNA (576bp) protein (192aa)
Glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
Glucose-1-phosphate thymidylyltransferase Tax=Pedosphaera parvula Ellin514 RepID=B9XD55_9BACT
Nucleotidyl transferase {ECO:0000313|EMBL:EEF58421.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM4_5_b1_sep16_scaffold_4694_13
Burkholderia sacchari, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9222..10610
DNA (1389bp) protein (463aa)
Response regulator/sensory box histidine kinase Tax=Burkholderia pseudomallei RepID=B7CZA9_BURPE
Histidine kinase {ECO:0000313|EMBL:KHD19788.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sacchari.;"
response regulator
PLM4_5_b1_sep16_scaffold_4694_14
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10607..11239
DNA (633bp) protein (211aa)
Two component transcriptional regulator, LuxR family Tax=Pedosphaera parvula Ellin514 RepID=B9XSJ4_9BACT
LuxR family response regulator
Tax=RBG_16_Anaeromyxobacter_69_14_curated
PLM4_5_b1_sep16_scaffold_4694_15
unknown

Not on your lists

11368..11649
DNA (282bp) protein (94aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_4694_16
RBG_13_Chloroflexi_52_14_curated, Chloroflexi, Bacteria

Not on your lists

11643..12116
DNA (474bp) protein (158aa)
Two component transcriptional regulator, LuxR family Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AST2_RUBXD
two component LuxR family transcriptional regulator
Tax=RBG_13_Chloroflexi_52_14_curated
PLM4_5_b1_sep16_scaffold_4694_17
Eubacterium plexicaudatum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12213..13856)
DNA (1644bp) protein (548aa)
Uncharacterized protein Tax=Eubacterium plexicaudatum ASF492 RepID=N2AXK4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EMZ33962.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium plexicaudatum ASF492.;"
PLM4_5_b1_sep16_scaffold_4694_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(13868..14437)
DNA (570bp) protein (190aa)
Two component, sigma54 specific, transcriptional regulator, Fis family Tax=Pedosphaera parvula Ellin514 RepID=B9XL82_9BACT
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:EEF59433.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
chemotaxis protein CheY
PLM4_5_b1_sep16_scaffold_4694_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(14437..15216)
DNA (780bp) protein (260aa)
Two component, sigma54 specific, transcriptional regulator, Fis family Tax=Pedosphaera parvula Ellin514 RepID=B9XL82_9BACT
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:EEF59433.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
two component sigma54 specific Fis family transcriptional regulator
PLM4_5_b1_sep16_scaffold_4694_20
unknown

Not on your lists

15306..15704
DNA (399bp) protein (133aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_4694_21
unknown

Not on your lists

15808..15882
DNA (75bp) protein (25aa)

This feature has no annotations

Displaying 21 items

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