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PLM4_5_b1_sep16_scaffold_6708

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_6708_1
unknown

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3..170
DNA (168bp) protein (56aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_6708_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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233..565
DNA (333bp) protein (111aa)
Thioredoxin Tax=Pedosphaera parvula Ellin514 RepID=B9XBW4_9BACT
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
trxA; Thioredoxin
PLM4_5_b1_sep16_scaffold_6708_3
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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995..1630
DNA (636bp) protein (212aa)
Type II secretion system protein Tax=Pedosphaera parvula Ellin514 RepID=B9XBW3_9BACT
Type II secretion system protein {ECO:0000313|EMBL:EEF62431.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
type II secretion system protein F
PLM4_5_b1_sep16_scaffold_6708_4
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(1637..2938)
DNA (1302bp) protein (434aa)
FAD-dependent pyridine nucleotide-disulphide oxidoreductase Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZTY1_OPITP
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
FAD-dependent pyridine nucleotide-disulphide oxidoreductase {ECO:0000313|EMBL:ACB75863.1}; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
PLM4_5_b1_sep16_scaffold_6708_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(3069..4526)
DNA (1458bp) protein (486aa)
PKD domain containing protein Tax=Pedosphaera parvula Ellin514 RepID=B9XS25_9BACT
PKD domain containing protein {ECO:0000313|EMBL:EEF57357.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
PLM4_5_b1_sep16_scaffold_6708_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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4991..5227
DNA (237bp) protein (79aa)
30S ribosomal protein S16 Tax=Pedosphaera parvula Ellin514 RepID=B9XSG9_9BACT
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
SSU ribosomal protein S16P
PLM4_5_b1_sep16_scaffold_6708_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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5240..5485
DNA (246bp) protein (82aa)
UPF0109 protein Cflav_PD0315 Tax=Pedosphaera parvula Ellin514 RepID=B9XSG8_9BACT
UPF0109 protein Cflav_PD0315 {ECO:0000256|HAMAP-Rule:MF_00088}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_6708_8
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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5501..6226
DNA (726bp) protein (242aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
trmD; tRNA (guanine-N1)-methyltransferase (EC:2.1.1.228)
tRNA (guanine-N(1)-)-methyltransferase Tax=Pedosphaera parvula Ellin514 RepID=B9XSG7_9BACT
PLM4_5_b1_sep16_scaffold_6708_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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6234..6605
DNA (372bp) protein (124aa)
50S ribosomal protein L19 Tax=Pedosphaera parvula Ellin514 RepID=B9XSG6_9BACT
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
rplS; 50S ribosomal protein L19
PLM4_5_b1_sep16_scaffold_6708_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(6693..7586)
DNA (894bp) protein (298aa)
Xylose isomerase domain protein TIM barrel Tax=Pedosphaera parvula Ellin514 RepID=B9XQU2_9BACT
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:EEF57799.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_6708_11
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(7674..8594)
DNA (921bp) protein (307aa)
Rhomboid family protein (Fragment) Tax=Pedosphaera parvula Ellin514 RepID=B9XMW1_9BACT
Rhomboid family protein {ECO:0000313|EMBL:EEF58757.1}; Flags: Fragment;; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
rhomboid-like membrane protein
Displaying 11 items

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