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RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..718)
DNA (717bp) protein (239aa)
leuB; 3-isopropylmalate dehydrogenase (EC:1.1.1.85); K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
leuB; 3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase id=4815520 bin=GWC2_Deltaproteobacteria_55_46 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_2
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(715..2283)
DNA (1569bp) protein (523aa)
leuA; 2-isopropylmalate synthase (EC:2.3.3.13); K01649 2-isopropylmalate synthase [EC:2.3.3.13] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
leuA; 2-isopropylmalate synthase (EC:2.3.3.13); K01649 2-isopropylmalate synthase [EC:2.3.3.13] id=15192290 bin=GWC2_NOV_55_46 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_NOV_55_46 organism_group=Proteobacteria
leuA; 2-isopropylmalate synthase (EC:2.3.3.13)
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_3
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2642..3496)
DNA (855bp) protein (285aa)
pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase; K00998 phosphatidylserine synthase [EC:2.7.8.8] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
CDP-diacylglycerol--serine O-phosphatidyltransferase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K339_DESAC
CDP-diacylglycerol--serine O-phosphatidyltransferase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_4
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3493..4122)
DNA (630bp) protein (210aa)
phosphatidylserine decarboxylase (EC:4.1.1.65); K01613 phosphatidylserine decarboxylase [EC:4.1.1.65] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
phosphatidylserine decarboxylase (EC:4.1.1.65)
Phosphatidylserine decarboxylase proenzyme id=4827363 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_5
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4188..5204)
DNA (1017bp) protein (339aa)
ilvC; Ketol-acid reductoisomerase (EC:1.1.1.86); K00053 ketol-acid reductoisomerase [EC:1.1.1.86] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
ilvC; Ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PC02_9BACT
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_6
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5283..6296)
DNA (1014bp) protein (338aa)
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component id=2130668 bin=GWD2_Deltaproteobacteria_55_8 species=Rhizobium sp. CF080 genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_7
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6528..8225
DNA (1698bp) protein (566aa)
amidohydrolase Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Amidohydrolase id=2018830 bin=GWD2_Deltaproteobacteria_55_8 species=Granulicella mallensis genus=Granulicella taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
amidohydrolase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_8
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8268..8783)
DNA (516bp) protein (172aa)
ilvH; acetolactate synthase small subunit (EC:2.2.1.6); K01653 acetolactate synthase I/III small subunit [EC:2.2.1.6] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
ilvH; acetolactate synthase small subunit (EC:2.2.1.6)
Acetolactate synthase, small subunit id=1960363 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_9
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8886..10664)
DNA (1779bp) protein (593aa)
ilvI; acetolactate synthase large subunit (EC:2.2.1.6); K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
ilvI; acetolactate synthase large subunit (EC:2.2.1.6)
Acetolactate synthase, large subunit id=1960366 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_10
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10693..10911)
DNA (219bp) protein (73aa)
Putative uncharacterized protein id=1960406 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein; K09794 hypothetical protein Tax=GWD2_Deltaproteobacteria_55_8_curated
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_11
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11012..11746)
DNA (735bp) protein (245aa)
glycoprotease family member; K14742 hypothetical protease [EC:3.4.-.-] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Glycoprotease protein family member id=1960408 bin=GWD2_Deltaproteobacteria_55_8 species=Heliobacterium modesticaldum genus=Heliobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
glycoprotease family member
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_12
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11805..12875)
DNA (1071bp) protein (357aa)
putative membrane-associated zinc metalloprotease; K11749 regulator of sigma E protease [EC:3.4.24.-] Tax=GWD2_Deltaproteobacteria_55_8_curated
Putative uncharacterized protein id=1960410 bin=GWD2_Deltaproteobacteria_55_8 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
putative membrane-associated zinc metalloprotease
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_13
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12889..14043)
DNA (1155bp) protein (385aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] Tax=GWD2_Deltaproteobacteria_55_8_curated
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase id=1960412 bin=GWD2_Deltaproteobacteria_55_8 species=Chlorobium ferrooxidans genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_14
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14040..14846)
DNA (807bp) protein (269aa)
cdsA; phosphatidate cytidylyltransferase; K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41] Tax=GWD2_Deltaproteobacteria_55_8_curated
Phosphatidate cytidylyltransferase id=1960417 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_15
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14843..15610)
DNA (768bp) protein (256aa)
uppS; di-trans,poly-cis-decaprenylcistransferase; K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Isoprenyl transferase id=1960420 bin=GWD2_Deltaproteobacteria_55_8 species=Tannerella forsythia genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
uppS; di-trans,poly-cis-decaprenylcistransferase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_16
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15649..16206)
DNA (558bp) protein (186aa)
Ribosome-recycling factor id=1960424 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ribosome recycling factor Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
ribosome recycling factor
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_17
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16203..16934)
DNA (732bp) protein (244aa)
pyrH; uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] Tax=GWD2_Deltaproteobacteria_55_8_curated
pyrH; uridylate kinase (EC:2.7.4.22)
Uridylate kinase id=1960428 bin=GWD2_Deltaproteobacteria_55_8 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_18
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16945..17556)
DNA (612bp) protein (204aa)
Elongation factor Ts id=1960432 bin=GWD2_Deltaproteobacteria_55_8 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
tsf; elongation factor Ts; K02357 elongation factor Ts Tax=GWD2_Deltaproteobacteria_55_8_curated
tsf; elongation factor Ts
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_19
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17562..18350)
DNA (789bp) protein (263aa)
30S ribosomal protein S2 id=1960438 bin=GWD2_Deltaproteobacteria_55_8 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
30S ribosomal protein S2
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_20
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18587..19885)
DNA (1299bp) protein (433aa)
Transcription termination factor Rho id=1960445 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
transcription termination factor Rho; K03628 transcription termination factor Rho Tax=GWD2_Deltaproteobacteria_55_8_curated
transcription termination factor Rho
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_21
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20210..21205)
DNA (996bp) protein (332aa)
rluD; pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA) (EC:4.2.1.70) Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Pseudouridine synthase id=1960451 bin=GWD2_Deltaproteobacteria_55_8 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
pseudouridine synthase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_22
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21251..22207)
DNA (957bp) protein (319aa)
riboflavin kinase/FMN adenylyltransferase (EC:2.7.1.26 2.7.7.2); K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] Tax=GWD2_Deltaproteobacteria_55_8_curated
Riboflavin biosynthesis protein RibF id=1960454 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ribF; riboflavin kinase and FAD synthetase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_23
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22337..23179)
DNA (843bp) protein (281aa)
putative aspartyl/asparaginyl beta-hydroxylase (Aspartate beta-hydroxylase) (Peptide-aspartate beta-dioxygenase) (EC:1.14.11.16) Tax=GWD2_Deltaproteobacteria_55_8_curated
putative aspartyl/asparaginyl beta-hydroxylase (Aspartate beta-hydroxylase) (Peptide-aspartate beta-dioxygenase) (EC:1.14.11.16)
Putative aspartyl/asparaginyl beta-hydroxylase (Aspartate beta-hydroxylase) (Peptide-aspartate beta-dioxygenase) id=1960458 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_24
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23262..23603)
DNA (342bp) protein (114aa)
OmpA/MotB domain-containing protein; K03640 peptidoglycan-associated lipoprotein Tax=GWD2_Deltaproteobacteria_55_8_curated
OmpA/MotB domain protein id=1960462 bin=GWD2_Deltaproteobacteria_55_8 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
peptidoglycan-associated lipoprotein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_108_25
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23809..25074)
DNA (1266bp) protein (422aa)
Protein TolB id=1960465 bin=GWD2_Deltaproteobacteria_55_8 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
WD40 domain-containing protein; K03641 TolB protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
translocation protein TolB
Displaying 25 items

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