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SCN18_25_8_15_R2_B_scaffold_525

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_525_1
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1439)
DNA (1437bp) protein (479aa)
cadA; cadmium-transporting ATPase CadA (EC:3.6.3.3)
Cadmium-transporting ATPase CadA {ECO:0000313|EMBL:AEI07617.1}; EC=3.6.3.3 {ECO:0000313|EMBL:AEI07617.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Cadmium-translocating P-type ATPase n=1 Tax=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) RepID=B6JBV2_OLICO
SCN18_25_8_15_R2_B_scaffold_525_2
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1980..3593)
DNA (1614bp) protein (538aa)
ctaD; Cytochrome c oxidase subunit 1 (EC:1.9.3.1)
Cytochrome c oxidase subunit 1 n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BSY2_9RHIZ
Cytochrome c oxidase subunit 1 {ECO:0000313|EMBL:EIM72684.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
SCN18_25_8_15_R2_B_scaffold_525_3
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3595..4488)
DNA (894bp) protein (298aa)
XshC-Cox1-family protein n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3J1Z7_9GAMM
XshC-Cox1-family protein {ECO:0000313|EMBL:EGW19753.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
XshC-Cox1-family protein
SCN18_25_8_15_R2_B_scaffold_525_4
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4894..7515)
DNA (2622bp) protein (874aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SU72_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA04169.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCN18_25_8_15_R2_B_scaffold_525_5
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7512..8975)
DNA (1464bp) protein (488aa)
exonuclease n=1 Tax=Xanthobacteraceae RepID=UPI000376103B
Exonuclease {ECO:0000313|EMBL:EZQ17379.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
exonuclease SbcD
SCN18_25_8_15_R2_B_scaffold_525_6
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9179..10048
DNA (870bp) protein (290aa)
Inner-membrane translocator n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LK71_SYNFM
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:ABK17823.1}; TaxID=335543 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Syntrophobacter.;" source="Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB).;"
SCN18_25_8_15_R2_B_scaffold_525_7
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10048..10995
DNA (948bp) protein (316aa)
ABC transporter permease n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00036B2AB0
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:ACA19934.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCN18_25_8_15_R2_B_scaffold_525_8
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10992..11759
DNA (768bp) protein (256aa)
ABC transporter n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI000375DD13
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ACA19933.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCN18_25_8_15_R2_B_scaffold_525_9
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11756..12466
DNA (711bp) protein (237aa)
ABC transporter related n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UBX2_METS4
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ACA19932.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCN18_25_8_15_R2_B_scaffold_525_10
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12499..13734
DNA (1236bp) protein (412aa)
Extracellular ligand-binding receptor n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LK70_SYNFM
extracellular ligand-binding receptor
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ABK17822.1}; Flags: Precursor;; TaxID=335543 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Syntrophobacter.;" source="Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB).;"
SCN18_25_8_15_R2_B_scaffold_525_11
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13767..14129
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Bordetella parapertussis (strain Bpp5) RepID=K0MB80_BORPB
Endoribonuclease L-PSP {ECO:0000313|EMBL:KCV64457.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_525_12
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14155..16503
DNA (2349bp) protein (783aa)
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I074_9BRAD
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein {ECO:0000313|EMBL:EJN11221.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
carbon monoxide dehydrogenase
SCN18_25_8_15_R2_B_scaffold_525_13
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16581..17513)
DNA (933bp) protein (311aa)
Transcriptional regulator n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TU84_TISMK
gcvA; transcriptional regulator
Glycine cleavage system transcriptional activator {ECO:0000313|EMBL:CEJ10189.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCN18_25_8_15_R2_B_scaffold_525_14
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17933..18847)
DNA (915bp) protein (305aa)
Quorum-sensing regulator protein D n=1 Tax=Betaproteobacteria bacterium MOLA814 RepID=V4YTE1_9PROT
Quorum-sensing regulator protein D {ECO:0000313|EMBL:ESS14937.1}; TaxID=1408164 species="Bacteria; Proteobacteria; Betaproteobacteria.;" source="Betaproteobacteria bacterium MOLA814.;"
LysR family transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_525_15
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19059..19943
DNA (885bp) protein (295aa)
Glutamate/aspartate ABC transporter, periplasmic substrate-binding protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LQ38_RUEPO
gltI; glutamate/aspartate ABC transporter, periplasmic substrate-binding protein
Glutamate/aspartate ABC transporter, periplasmic substrate-binding protein {ECO:0000313|EMBL:AAV95903.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3); (Silicibacter pomeroyi).;"
SCN18_25_8_15_R2_B_scaffold_525_16
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19989..20690
DNA (702bp) protein (234aa)
Glutamate/aspartate ABC transporter, permease protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SK48_9RHOB
Glutamate ABC transporter permease {ECO:0000313|EMBL:KJS44632.1}; TaxID=1629709 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. BRH_c41.;"
gltJ; glutamate/aspartate transport system permease GltJ
SCN18_25_8_15_R2_B_scaffold_525_17
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20698..21351
DNA (654bp) protein (218aa)
Glutamate/aspartate ABC transporter, permease protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LQ36_RUEPO
gltK; glutamate/aspartate ABC transporter, permease protein
Glutamate/aspartate ABC transporter, permease protein {ECO:0000313|EMBL:AAV95905.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3); (Silicibacter pomeroyi).;"
SCN18_25_8_15_R2_B_scaffold_525_18
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21348..22079
DNA (732bp) protein (244aa)
ABC transporter (EC:3.6.3.27)
arginine ABC transporter ATP-binding protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI00035EE2E5
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
SCN18_25_8_15_R2_B_scaffold_525_19
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22365..23147)
DNA (783bp) protein (261aa)
Intracellular protease/amidase n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K5S3_AGRVS
intracellular protease/amidase
Intracellular protease/amidase {ECO:0000313|EMBL:ACM40221.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCN18_25_8_15_R2_B_scaffold_525_20
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23365..23775)
DNA (411bp) protein (137aa)
SCN18_25_8_15_R2_B_scaffold_525_21
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23865..24632)
DNA (768bp) protein (256aa)
Putative transmembrane anti-sigma factor n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ESD3_METSB
putative transmembrane anti-sigma factor
Putative transmembrane anti-sigma factor {ECO:0000313|EMBL:ACK49823.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCN18_25_8_15_R2_B_scaffold_525_22
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24629..25144)
DNA (516bp) protein (172aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1LX90_METRJ
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACB27211.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
SCN18_25_8_15_R2_B_scaffold_525_23
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25146..25586)
DNA (441bp) protein (147aa)
Uncharacterized protein id=2101195 bin=GWB2_Nitrospirae_rel_47_37 species=Thauera aminoaromatica genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
hypothetical protein
Tax=CG_Syntroph_01
SCN18_25_8_15_R2_B_scaffold_525_24
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25598..26983)
DNA (1386bp) protein (462aa)
Uncharacterized protein n=1 Tax=Thauera aminoaromatica S2 RepID=N6Y2J8_9RHOO
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCN18_25_8_15_R2_B_scaffold_525_25
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27567..28439
DNA (873bp) protein (291aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
UPI0003CE46A5 related cluster n=1 Tax=unknown RepID=UPI0003CE46A5
undecaprenol kinase
SCN18_25_8_15_R2_B_scaffold_525_26
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28439..28840
DNA (402bp) protein (134aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q213T9_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD88347.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCN18_25_8_15_R2_B_scaffold_525_27
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28895..29374
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P106_AZOS1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI74335.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCN18_25_8_15_R2_B_scaffold_525_28
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29371..30459
DNA (1089bp) protein (363aa)
TRAP-type mannitol/chloroaromatic compound transport permease n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8ILE6_AZOC5
TRAP-type mannitol/chloroaromatic compound transport permease
TRAP-type mannitol/chloroaromatic compound transport permease {ECO:0000313|EMBL:BAF90021.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCN18_25_8_15_R2_B_scaffold_525_29
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30459..30791
DNA (333bp) protein (111aa)
TRAP-type mannitol/chloroaromatic compound transport system, large permease component n=1 Tax=Variovorax sp. CF313 RepID=J3CTC5_9BURK
TRAP-type mannitol/chloroaromatic compound transport system, large permease component {ECO:0000313|EMBL:EJL78084.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
TRAP dicarboxylate transporter subunit DctM
SCN18_25_8_15_R2_B_scaffold_525_30
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30873..32600)
DNA (1728bp) protein (576aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003726302
Putative sulfate transporter/MT1781 {ECO:0000313|EMBL:CEJ11654.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
sulfate transporter
Displaying items 1-30 of 59 in total

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