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SCNpilot_cont_300_bf_scaffold_506_curated

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Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_506_curated_1
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(393..776)
DNA (384bp) protein (128aa)
C-5 cytosine-specific DNA methylase; K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37]
DNA methyltransferase n=1 Tax=Thauera terpenica 58Eu RepID=S9ZIG6_9RHOO
DNA methyltransferase {ECO:0000313|EMBL:AJW47675.1}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
SCNpilot_cont_300_bf_scaffold_506_curated_2
Burkholderia sp. KJ006, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

976..1281
DNA (306bp) protein (102aa)
transposase n=1 Tax=Bordetella sp. FB-8 RepID=UPI000360C5E2
transposase
Putative transposase {ECO:0000313|EMBL:AFJ89887.1}; TaxID=416344 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. KJ006.;"
SCNpilot_cont_300_bf_scaffold_506_curated_3
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1278..2111
DNA (834bp) protein (278aa)
Mobile element protein n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2H8W7_BURVI
Mobile element protein {ECO:0000313|EMBL:ERJ34623.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
transposase rbh
SCNpilot_cont_300_bf_scaffold_506_curated_4
Burkholderiales bacterium MUL2G11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2087..2680
DNA (594bp) protein (198aa)
Putative invertase/recombinase protein n=1 Tax=Burkholderiales bacterium MUL2G11 RepID=Q1KY31_9BURK
Putative invertase/recombinase protein {ECO:0000313|EMBL:ABE73753.1}; TaxID=371156 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium MUL2G11.;"
resolvase domain-containing protein
SCNpilot_cont_300_bf_scaffold_506_curated_5
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2752..3102)
DNA (351bp) protein (117aa)
IS66 Orf2 family protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BSL1_9BURK
IS66 Orf2 family protein
IS66 Orf2 family protein {ECO:0000313|EMBL:EHL24673.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
SCNpilot_cont_300_bf_scaffold_506_curated_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3078..3518)
DNA (441bp) protein (147aa)
Transposase IS3/IS911 family protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYG1_VARPS
transposase IS3/IS911 family protein; K07483 transposase
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:ACS18920.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_506_curated_7
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3677..3895
DNA (219bp) protein (73aa)
Integrase family protein n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IEE2_9BURK
Integrase family protein {ECO:0000313|EMBL:EIF29094.1}; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
integrase catalytic subunit
SCNpilot_cont_300_bf_scaffold_506_curated_8
Burkholderia sp. BT03, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3911..4630
DNA (720bp) protein (240aa)
Integrase family protein n=1 Tax=Burkholderia sp. BT03 RepID=J3BEU6_9BURK
Integrase catalytic region {ECO:0000313|EMBL:EUC14764.1}; TaxID=1144309 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. BT03.;"
integrase catalytic subunit
SCNpilot_cont_300_bf_scaffold_506_curated_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5355..6347)
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Ralstonia sp. PBA RepID=I9W8U2_9RALS
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_cont_300_bf_scaffold_506_curated_10
Burkholderia sp. YI23, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6364..7275)
DNA (912bp) protein (304aa)
Transcriptional regulator, IclR family n=1 Tax=Burkholderia sp. YI23 RepID=G8MH25_9BURK
iclR; IclR family transcriptional regulator
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AET92892.1}; TaxID=1097668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. YI23.;"
SCNpilot_cont_300_bf_scaffold_506_curated_11
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7452..8441
DNA (990bp) protein (330aa)
putative flavodoxin oxidoreductase (EC:1.5.1.30)
Ferredoxin--NAD(+) reductase-like protein id=1270799 bin=GWE1_Burkholderiales_65_30 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_cont_300_bf_scaffold_506_curated_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8457..9701
DNA (1245bp) protein (415aa)
Putative anthranilate 1,2-dioxygenase, large subunit n=1 Tax=Variovorax paradoxus B4 RepID=T1XKW1_VARPD
putative anthranilate 1,2-dioxygenase, large subunit
Putative anthranilate 1,2-dioxygenase, large subunit {ECO:0000313|EMBL:AGU53522.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_506_curated_13
Burkholderia terrae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9703..10179
DNA (477bp) protein (159aa)
tphA; putative terephthalate 1,2-dioxygenase, small subunit (TphA2); K05709 3-phenylpropionate/cinnamic acid dioxygenase subunit beta [EC:1.14.12.19]
Small subunit of phenylpropionate dioxygenase n=2 Tax=Burkholderia RepID=J2H9X7_9BURK
Putative terephthalate 1,2-dioxygenase, small subunit {ECO:0000313|EMBL:EIM95222.1}; TaxID=1171375 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia terrae BS001.;"
SCNpilot_cont_300_bf_scaffold_506_curated_14
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10186..11127
DNA (942bp) protein (314aa)
4-hydroxythreonine-4-phosphate dehydrogenase; K00097 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
Terephthalate dihydrodiol dehydrogenase n=1 Tax=Advenella kashmirensis W13003 RepID=V8QQD5_9BURK
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_506_curated_15
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11124..11954
DNA (831bp) protein (277aa)
2-hydroxy-6-oxo-2,4-heptadienoate hydrolase {ECO:0000313|EMBL:CDX33173.1}; EC=3.1.1.- {ECO:0000313|EMBL:CDX33173.1};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
alpha/beta hydrolase fold protein; K10702 2-hydroxy-6-oxohepta-2,4-dienoate hydroxylase [EC:3.7.1.-]
Alpha/beta hydrolase fold protein n=1 Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A3K3_THECD
SCNpilot_cont_300_bf_scaffold_506_curated_16
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11951..12865
DNA (915bp) protein (305aa)
glyoxalase/bleomycin resistance protein/dioxygenase; K14751 2,3-dihydroxyethylbenzene 1,2-dioxygenase [EC:1.13.11.-]
Dihydroxy naphthalene/biphenyl dioxygenase n=3 Tax=Sphingomonadaceae RepID=J8VV45_9SPHN
Naphthalene 1,2-dioxygenase {ECO:0000313|EMBL:ETI64626.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
SCNpilot_cont_300_bf_scaffold_506_curated_17
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12882..13700)
DNA (819bp) protein (273aa)
IclR helix-turn-helix protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A211_9PROT
IclR helix-turn-helix protein {ECO:0000313|EMBL:EHL99945.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
transcriptional regulatory protein
SCNpilot_cont_300_bf_scaffold_506_curated_18
Sphingomonas sp. Ibu-2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13851..15143
DNA (1293bp) protein (431aa)
Putative ibuprofen CoA dioxygenase large subunit n=1 Tax=Sphingomonas sp. Ibu-2 RepID=A1E031_9SPHN
Putative ibuprofen CoA dioxygenase large subunit {ECO:0000313|EMBL:ABK92277.1}; TaxID=412900 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ibu-2.;"
putative dioxygenase hydroxylase component subunit alpha
SCNpilot_cont_300_bf_scaffold_506_curated_19
Sphingomonas sp. Ibu-2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15140..15673
DNA (534bp) protein (178aa)
Putative ibuprofen-CoA dioxygenase small subunit n=1 Tax=Sphingomonas sp. Ibu-2 RepID=A1E030_9SPHN
Putative ibuprofen-CoA dioxygenase small subunit {ECO:0000313|EMBL:ABK92276.1}; TaxID=412900 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ibu-2.;"
putative dioxygenase component subunit beta
SCNpilot_cont_300_bf_scaffold_506_curated_20
Sphingomonas sp. Ibu-2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15688..17274
DNA (1587bp) protein (529aa)
Ibuprofen CoA ligase n=1 Tax=Sphingomonas sp. Ibu-2 RepID=A1E027_9SPHN
Ibuprofen CoA ligase {ECO:0000313|EMBL:ABK92273.1}; TaxID=412900 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ibu-2.;"
AMP-dependent synthetase and ligase
SCNpilot_cont_300_bf_scaffold_506_curated_21
Sphingomonas sp. Ibu-2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17271..18452
DNA (1182bp) protein (394aa)
Putative thiolase/acyl transferase n=1 Tax=Sphingomonas sp. Ibu-2 RepID=A1E029_9SPHN
Putative thiolase/acyl transferase {ECO:0000313|EMBL:ABK92275.1}; TaxID=412900 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ibu-2.;"
putative thiolase
SCNpilot_cont_300_bf_scaffold_506_curated_22
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18460..18867
DNA (408bp) protein (136aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UTZ6_PSEUP
hypothetical protein
DNA-binding protein {ECO:0000313|EMBL:KJC49344.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCNpilot_cont_300_bf_scaffold_506_curated_23
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18892..19863
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI00037D28DC
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
SCNpilot_cont_300_bf_scaffold_506_curated_24
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20456..21361)
DNA (906bp) protein (302aa)
LysR-family transcriptional regulator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJD8_9BURK
LysR-family transcriptional regulator {ECO:0000313|EMBL:EIK89328.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_506_curated_25
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21463..23133
DNA (1671bp) protein (557aa)
Putative monooxygenase, FAD-binding protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJD7_9BURK
Putative monooxygenase, FAD-binding protein {ECO:0000313|EMBL:EIK89327.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
putative FAD-binding monooxygenase
SCNpilot_cont_300_bf_scaffold_506_curated_26
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23130..24110
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJD6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK89326.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_506_curated_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24192..24623
DNA (432bp) protein (144aa)
Transcriptional regulator, MarR family n=2 Tax=Variovorax paradoxus RepID=C5CXA5_VARPS
putative homoprotocatechuate degradative operon repressor HapR
Putative homoprotocatechuate degradative operon repressor HapR {ECO:0000313|EMBL:AGU47430.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_506_curated_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24620..25270
DNA (651bp) protein (217aa)
fumarylacetoacetate (FAA) hydrolase; K05921 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-]
Fumarylacetoacetate (FAA) hydrolase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CXA4_VARPS
Variovorax paradoxus strain MEDvA23 contig_24, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33041.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_506_curated_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25267..26016
DNA (750bp) protein (250aa)
4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase subunit HpaG2 (EC:5.3.3.10); K05921 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-]
4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit {ECO:0000313|EMBL:ACS16907.1}; EC=5.3.3.10 {ECO:0000313|EMBL:ACS16907.1};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CXA3_VARPS
SCNpilot_cont_300_bf_scaffold_506_curated_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26013..27479
DNA (1467bp) protein (489aa)
5-carboxymethyL-2-hydroxymuconate semialdehyde dehydrogenase; K00151 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60]
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J3CG37_9BURK
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase {ECO:0000313|EMBL:EJL70974.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Displaying items 1-30 of 52 in total

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