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SCNpilot_cont_500_bf_scaffold_102

Search features with annotation key words

Displaying items 1-30 of 155 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_102_1
RLO_Sphingomonadales_63_15, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(407..1630)
DNA (1224bp) protein (408aa)
integrase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6880B rbh
symbiosis island integrase rbh
Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
SCNpilot_cont_500_bf_scaffold_102_trna_2
unknown

Not on your lists

comp(1821..1892)
DNA (72bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_102_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1933..2802)
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4E5DF rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO53986.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_102_3
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2799..4124)
DNA (1326bp) protein (442aa)
Recombination factor protein RarA n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZB30_9SPHN rbh
Recombination factor protein RarA {ECO:0000313|EMBL:EGD58103.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
recombination factor protein RarA; K07478 putative ATPase
SCNpilot_cont_500_bf_scaffold_102_4
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4415..5599)
DNA (1185bp) protein (395aa)
Glycosyl transferase, group 1 n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZB28_9SPHN rbh
Glycosyl transferase family 1 {ECO:0000313|EMBL:KHK92747.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
group 1 glycosyl transferase rbh
SCNpilot_cont_500_bf_scaffold_102_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5840..6280)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000361073D
Uncharacterized protein {ECO:0000313|EMBL:GAO54820.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
SCNpilot_cont_500_bf_scaffold_102_6
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7644..9470)
DNA (1827bp) protein (609aa)
GTP-binding protein TypA n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NFC8_9SPHN rbh
GTP-binding protein TypA {ECO:0000313|EMBL:EAT09583.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
GTP-binding protein TypA; K06207 GTP-binding protein rbh
SCNpilot_cont_500_bf_scaffold_102_7
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9806..12481
DNA (2676bp) protein (892aa)
TonB-dependent receptor n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WB38_9SPHN rbh
TonB-dependent receptor {ECO:0000313|EMBL:EIZ77366.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
TonB-dependent receptor rbh
SCNpilot_cont_500_bf_scaffold_102_8
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12617..13084
DNA (468bp) protein (156aa)
Putative uncharacterized protein n=2 Tax=Novosphingobium RepID=F6IIE4_9SPHN
Inner membrane protein YhaI {ECO:0000313|EMBL:KHS43177.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_102_9
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13084..13500
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B564A3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD25594.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_102_10
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13509..16010)
DNA (2502bp) protein (834aa)
ABC transporter permease n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EE09_9SPHN
ABC transporter permease {ECO:0000313|EMBL:KHL26406.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
ABC transporter permease; K02004 putative ABC transport system permease protein
SCNpilot_cont_500_bf_scaffold_102_11
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16007..16798)
DNA (792bp) protein (264aa)
ABC transporter n=1 Tax=Sphingomonas sp. LH128 RepID=J8VQZ7_9SPHN rbh
ABC transporter {ECO:0000313|EMBL:EZP73856.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
ABC transporter; K02003 putative ABC transport system ATP-binding protein rbh
SCNpilot_cont_500_bf_scaffold_102_12
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16831..17499
DNA (669bp) protein (223aa)
Putative acyl-CoA thioesterase I protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C0T8_9SPHN
Putative acyl-CoA thioesterase I protein {ECO:0000313|EMBL:EIZ77362.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
putative acyl-CoA thioesterase I protein
SCNpilot_cont_500_bf_scaffold_102_13
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17580..18443
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00036B54E5
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ACA20193.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_cont_500_bf_scaffold_102_14
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18669..20948
DNA (2280bp) protein (760aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002E18628 rbh
hypothetical protein
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_cont_500_bf_scaffold_102_15
Trichodesmium erythraeum, Trichodesmium, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

21041..21778
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Pleurocapsa sp. PCC 7319 RepID=UPI00034DE5FD
glycosyl transferase family protein
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABG53424.1}; TaxID=203124 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Trichodesmium.;" source="Trichodesmium erythraeum (strain IMS101).;"
SCNpilot_cont_500_bf_scaffold_102_16
unknown

Not on your lists

21797..22213
DNA (417bp) protein (139aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_102_17
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22547..23368
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002D30E45
WcbD {ECO:0000313|EMBL:EQA97219.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
putative capsule polysaccharide export inner-membrane protein; K10107 capsular polysaccharide transport system permease protein
SCNpilot_cont_500_bf_scaffold_102_18
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23371..24153
DNA (783bp) protein (261aa)
Putative capsule polysaccharide export inner-membrane protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S603_9SPHN
putative capsule polysaccharide export inner-membrane protein
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_500_bf_scaffold_102_19
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24150..24797
DNA (648bp) protein (216aa)
ATP-binding protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B6F959 rbh
putative capsule polysaccharide export ATP-binding protein rbh
Putative capsule polysaccharide export ATP-binding protein {ECO:0000313|EMBL:AGH49935.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_500_bf_scaffold_102_20
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24804..26573)
DNA (1770bp) protein (590aa)
Glycosyl transferase, family 2 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAE7_NOVAD rbh
glycosyl transferase rbh
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABD25176.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_102_21
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26567..27562)
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAE6_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD25177.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_102_22
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27547..28467)
DNA (921bp) protein (307aa)
Capsule polysaccharide biosynthesis n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11EP3_MESSB rbh
capsule polysaccharide biosynthesis; K07266 capsular polysaccharide export protein rbh
Capsule polysaccharide biosynthesis {ECO:0000313|EMBL:ABG64132.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_500_bf_scaffold_102_23
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28469..29539
DNA (1071bp) protein (357aa)
capsule polysaccharide transporter n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B5C39F rbh
Capsule biosynthesis protein {ECO:0000313|EMBL:EXS68685.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
putative capsule polysaccharide export outer membrane protein; K01991 polysaccharide export outer membrane protein
SCNpilot_cont_500_bf_scaffold_102_24
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30387..31748)
DNA (1362bp) protein (454aa)
capsular polysaccharide biosynthesis protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630826 rbh
Putative capsule polysaccharide export protein {ECO:0000313|EMBL:EIZ78493.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
putative capsule polysaccharide export protein rbh
SCNpilot_cont_500_bf_scaffold_102_25
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32202..33311
DNA (1110bp) protein (370aa)
mannose-1-phosphate guanylyltransferase (EC:2.7.7.22) rbh
Mannose-1-phosphate guanylyltransferase (Fragment) n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C7M3_9SPHN rbh
Mannose-1-phosphate guanylyltransferase {ECO:0000313|EMBL:EIZ79435.1}; Flags: Fragment;; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
SCNpilot_cont_500_bf_scaffold_102_26
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33322..34161
DNA (840bp) protein (280aa)
mannose-6-phosphate isomerase (EC:5.3.1.8); K01809 mannose-6-phosphate isomerase [EC:5.3.1.8] rbh
Mannose-6-phosphate isomerase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J9L1_9SPHN rbh
Mannose-6-phosphate isomerase {ECO:0000313|EMBL:KHL24444.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
SCNpilot_cont_500_bf_scaffold_102_27
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34210..35262
DNA (1053bp) protein (351aa)
KpsF/GutQ family protein (EC:5.3.1.13); K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13] rbh
KpsF/GutQ family protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VDE4_SPHWW rbh
ScaffoldA20, whole genome shotgun sequence {ECO:0000313|EMBL:KIS29583.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
SCNpilot_cont_500_bf_scaffold_102_28
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35575..36693
DNA (1119bp) protein (373aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7] rbh
DNA polymerase III subunit beta n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J2P7_9SPHN rbh
SCNpilot_cont_500_bf_scaffold_102_29
unknown

Not on your lists

36833..37504
DNA (672bp) protein (224aa)
Putative Membrane protein n=1 Tax=Vibrio nigripulchritudo SFn118 RepID=U4GB96_9VIBR
Displaying items 1-30 of 155 in total

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