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SCNpilot_cont_500_bf_scaffold_14894

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_14894_1
unknown

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3..113
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_14894_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(119..2119)
DNA (2001bp) protein (667aa)
pbpC; penicillin-binding protein 1C; K05367 penicillin-binding protein 1C [EC:2.4.1.-]
Penicillin-binding protein 1C n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J7G7_AGRRK
Penicillin-binding protein 1C {ECO:0000313|EMBL:ACM25139.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_cont_500_bf_scaffold_14894_3
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2126..3424)
DNA (1299bp) protein (433aa)
membrane protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000377C5C2
Inner membrane lipoprotein {ECO:0000313|EMBL:KEC79173.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
inner membrane lipoprotein; K06894
SCNpilot_cont_500_bf_scaffold_14894_4
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3396..6881)
DNA (3486bp) protein (1162aa)
Putative alpha-2-macroglobulin domain-containing protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AGQ7_RHIFH
Putative alpha-2-macroglobulin domain-containing protein {ECO:0000313|EMBL:CCF00239.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
putative alpha-2-macroglobulin domain-containing protein; K06894
SCNpilot_cont_500_bf_scaffold_14894_5
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6833..7378)
DNA (546bp) protein (182aa)
membrane protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00036550DB
hypothetical protein; K06894
Uncharacterized protein {ECO:0000313|EMBL:CCM79329.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
SCNpilot_cont_500_bf_scaffold_14894_6
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7705..8022)
DNA (318bp) protein (106aa)
response regulator n=1 Tax=Rhizobium mongolense RepID=UPI0003B44109
Response regulator CheY-like domain-containing protein {ECO:0000313|EMBL:AJD45222.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
response regulator protein
SCNpilot_cont_500_bf_scaffold_14894_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8451..9071)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D321_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81502.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
periplasmic ligand-binding sensor protein; K09945 hypothetical protein
SCNpilot_cont_500_bf_scaffold_14894_8
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9114..9623)
DNA (510bp) protein (170aa)
Integral membrane protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LR12_RHITR
integral membrane protein
Integral membrane protein {ECO:0000313|EMBL:AGB72564.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_14894_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9758..10531)
DNA (774bp) protein (258aa)
Putative transmembrane anti-sigma factor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBQ4_9RHIZ rbh
Putative transmembrane anti-sigma factor {ECO:0000313|EMBL:EYR78720.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_14894_10
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10518..11057)
DNA (540bp) protein (180aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Rhizobium sp. CF122 RepID=J2I501_9RHIZ
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EJL50945.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_500_bf_scaffold_14894_11
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11282..12151
DNA (870bp) protein (290aa)
membrane protein n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00035D5DD9
Uncharacterized protein {ECO:0000313|EMBL:EHH08626.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
conserved membrane protein of unknown function
SCNpilot_cont_500_bf_scaffold_14894_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12251..12643)
DNA (393bp) protein (131aa)
Putative K(+)/H(+) antiporter subunit G n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX70_9RHIZ
Putative K(+)/H(+) antiporter subunit G {ECO:0000313|EMBL:EYR77488.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative monovalent cation/H+ antiporter subunit G; K05564 multicomponent K+:H+ antiporter subunit G
SCNpilot_cont_500_bf_scaffold_14894_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12640..12921)
DNA (282bp) protein (94aa)
Multiple resistance and pH regulation protein F n=2 Tax=Rhodopseudomonas palustris RepID=B3QKI9_RHOPT
phaF; monovalent cation/H+ antiporter subunit F; K05563 multicomponent K+:H+ antiporter subunit F
Multiple resistance and pH regulation protein F {ECO:0000313|EMBL:ACF01638.1}; Flags: Precursor;; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_cont_500_bf_scaffold_14894_14
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12918..13115)
DNA (198bp) protein (66aa)
Cation:proton antiporter n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SDZ0_9RHIZ
Cation:proton antiporter {ECO:0000313|EMBL:AHB49091.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
phaE; monovalent cation/H+ antiporter subunit E; K05562 multicomponent K+:H+ antiporter subunit E
Displaying 14 items

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