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SCNpilot_cont_500_bf_scaffold_9238

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_9238_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..166)
DNA (165bp) protein (55aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037BD99F
Transcriptional regulator LysR family {ECO:0000313|EMBL:EYR84291.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LysR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_9238_2
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

344..853
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000365872B rbh
Transcriptional regulator {ECO:0000313|EMBL:GAJ30339.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
transcriptional regulator protein
SCNpilot_cont_500_bf_scaffold_9238_3
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

858..2027
DNA (1170bp) protein (390aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
3-oxoacyl-(acyl carrier protein) synthase II; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
3-oxoacyl-ACP synthase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037C2B7C
SCNpilot_cont_500_bf_scaffold_9238_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2062..2979)
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036BB541 rbh
Transcriptional regulator {ECO:0000313|EMBL:EYR84289.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LysR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_9238_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3069..4244)
DNA (1176bp) protein (392aa)
Tetracycline resistance protein n=39 Tax=Bacteria RepID=Q2FD26_ACIBA rbh
Arabinose efflux permease {ECO:0000313|EMBL:EYR84288.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
tetracycline resistance protein; K08151 MFS transporter, DHA1 family, tetracycline resistance protein rbh
SCNpilot_cont_500_bf_scaffold_9238_6
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4349..4975
DNA (627bp) protein (209aa)
TetR family transcriptional regulator n=1 Tax=Hoeflea sp. 108 RepID=UPI00036D7043 rbh
Tetracycline repressor protein class G {ECO:0000313|EMBL:GAJ30335.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
tetracycline repressor protein class G rbh
SCNpilot_cont_500_bf_scaffold_9238_7
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4972..6927)
DNA (1956bp) protein (652aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003636356 rbh
Uncharacterized protein {ECO:0000313|EMBL:KFL26585.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_9238_8
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7153..7821)
DNA (669bp) protein (223aa)
lytic transglycosylase n=1 Tax=Pseudomonas aeruginosa RepID=UPI0003AC80EC
Lytic transglycosylase {ECO:0000313|EMBL:GAJ30331.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
lytic transglycosylase
SCNpilot_cont_500_bf_scaffold_9238_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8179..8514)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D8G6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR84280.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_9238_10
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8551..8676)
DNA (126bp) protein (42aa)
Type IV secretory pathway, protease TraF n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U3ATV9_9CAUL
Peptidase S26 {ECO:0000313|EMBL:EQL43051.1}; TaxID=1350465 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA03.;"
TraF peptidase
Displaying 10 items

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