ggKbase home page
Advanced Search
Search Help

SCNPILOT_CONT_300_BF_Rhizobiales_61_16

SCNPILOT_EXPT_1000_BF_Rhizobiales_61_5
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_1000_bf_UNK

Properties

Avg. coverage: 4.77 Longest contig: 25.11 Kbp Bin length: 4.64 Mbp GC content: 60.72 %
Contigs count: 913 Features count: 5488 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 31 / 55 MC: 2 BSCG 31 / 51 MC: 5 ASCG 8 / 38 MC: 2
Displaying items 101-150 of 913 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_7891
Phylum: Proteobacteria (72.73%)
11 11314 bp 58.42 4.84 86.02
SCNpilot_expt_1000_bf_scaffold_14777
Order: Rhizobiales (81.82%)
11 7857 bp 61.22 4.80 82.17
SCNpilot_expt_1000_bf_scaffold_4625
Order: Rhizobiales (63.64%)
11 9753 bp 64.22 4.90 86.53
SCNpilot_expt_1000_bf_scaffold_9463
Order: Rhizobiales (72.73%)
11 6275 bp 61.80 5.70 81.13
SCNpilot_expt_1000_bf_scaffold_7401
Class: Alphaproteobacteria (54.55%)
11 8328 bp 60.06 5.25 91.07
SCNpilot_expt_1000_bf_scaffold_10912
Order: Rhizobiales (72.73%)
11 8512 bp 60.39 4.20 78.21
SCNpilot_expt_1000_bf_scaffold_2592
Phylum: Proteobacteria (90.91%)
11 10235 bp 61.24 6.11 84.59
SCNpilot_expt_1000_bf_scaffold_7423
Order: Rhizobiales (81.82%)
11 9490 bp 57.61 4.79 78.97
SCNpilot_expt_1000_bf_scaffold_10928
Order: Rhizobiales (81.82%)
11 11394 bp 61.10 4.52 79.28
SCNpilot_expt_1000_bf_scaffold_9492
Domain: Bacteria (81.82%)
11 8094 bp 62.48 5.78 77.91
SCNpilot_expt_1000_bf_scaffold_14053
Class: Alphaproteobacteria (63.64%)
11 9541 bp 60.70 4.43 84.77
SCNpilot_expt_1000_bf_scaffold_11446 11 8647 bp 62.91 4.02 96.59
SCNpilot_expt_1000_bf_scaffold_4919
Class: Alphaproteobacteria (54.55%)
11 10507 bp 59.34 4.73 84.74
SCNpilot_expt_1000_bf_scaffold_8925
Class: Alphaproteobacteria (90.91%)
11 8073 bp 60.15 4.40 84.84
SCNpilot_expt_1000_bf_scaffold_19818
Order: Rhizobiales (72.73%)
11 7417 bp 62.77 4.58 79.68
SCNpilot_expt_1000_bf_scaffold_3787
Order: Rhizobiales (72.73%)
11 8781 bp 61.64 5.18 90.19
SCNpilot_expt_1000_bf_scaffold_2675
Order: Rhizobiales (63.64%)
11 12403 bp 60.97 5.32 87.37
SCNpilot_expt_1000_bf_scaffold_22673
Phylum: Proteobacteria (54.55%)
11 7128 bp 54.64 5.05 65.91
SCNpilot_expt_1000_bf_scaffold_11279
Order: Rhizobiales (90.91%)
11 9700 bp 63.43 4.82 81.90
SCNpilot_expt_1000_bf_scaffold_5617
Phylum: Proteobacteria (70%)
10 7093 bp 60.64 3.91 88.44
SCNpilot_expt_1000_bf_scaffold_3066
Order: Rhizobiales (90%)
10 9126 bp 61.40 5.04 83.93
SCNpilot_expt_1000_bf_scaffold_5891
Order: Rhizobiales (50%)
10 11601 bp 59.42 5.30 80.94
SCNpilot_expt_1000_bf_scaffold_16069
Genus: Bradyrhizobium (80%)
10 10152 bp 60.06 5.17 72.84
SCNpilot_expt_1000_bf_scaffold_15255
Order: Rhizobiales (60%)
10 7841 bp 58.35 4.88 89.68
SCNpilot_expt_1000_bf_scaffold_12656
Species: Haematobacter massiliensis (50%)
10 7872 bp 57.39 5.08 83.42
SCNpilot_expt_1000_bf_scaffold_20737
Class: Betaproteobacteria (50%)
10 7272 bp 57.52 4.81 81.72
SCNpilot_expt_1000_bf_scaffold_11342
Phylum: Proteobacteria (60%)
10 6909 bp 60.04 5.72 84.54
SCNpilot_expt_1000_bf_scaffold_13000
Order: Rhizobiales (60%)
10 7031 bp 58.92 4.59 89.86
SCNpilot_expt_1000_bf_scaffold_16114
Phylum: Proteobacteria (60%)
10 6762 bp 60.62 4.88 81.94
SCNpilot_expt_1000_bf_scaffold_10591
Order: Rhizobiales (50%)
10 6633 bp 59.32 4.49 92.40
SCNpilot_expt_1000_bf_scaffold_17471
Order: Rhizobiales (50%)
10 7654 bp 61.33 5.52 78.27
SCNpilot_expt_1000_bf_scaffold_5954
Order: Rhizobiales (70%)
10 10539 bp 62.99 5.43 92.14
SCNpilot_expt_1000_bf_scaffold_12706
Order: Rhizobiales (50%)
10 7923 bp 63.36 5.17 86.94
SCNpilot_expt_1000_bf_scaffold_5194
Order: Rhizobiales (80%)
10 9735 bp 62.93 5.75 82.10
SCNpilot_expt_1000_bf_scaffold_5711
Phylum: Proteobacteria (80%)
10 8713 bp 60.45 5.02 92.86
SCNpilot_expt_1000_bf_scaffold_8320
Order: Rhizobiales (50%)
10 8051 bp 59.84 4.69 89.80
SCNpilot_expt_1000_bf_scaffold_28509 10 5702 bp 63.05 3.95 79.24
SCNpilot_expt_1000_bf_scaffold_8590
Order: Rhizobiales (70%)
10 8534 bp 62.08 4.72 88.90
SCNpilot_expt_1000_bf_scaffold_10895
Order: Rhizobiales (80%)
10 8971 bp 60.85 4.93 85.94
SCNpilot_expt_1000_bf_scaffold_11409
Class: Betaproteobacteria (80%)
10 7588 bp 60.98 4.88 93.66
SCNpilot_expt_1000_bf_scaffold_11923 10 6158 bp 61.33 4.47 93.24
SCNpilot_expt_1000_bf_scaffold_2575
Order: Rhizobiales (70%)
10 9804 bp 61.93 5.58 85.31
SCNpilot_expt_1000_bf_scaffold_8106
Phylum: Proteobacteria (70%)
10 9029 bp 59.15 4.40 75.32
SCNpilot_expt_1000_bf_scaffold_11692
Order: Rhizobiales (90%)
10 9574 bp 58.52 4.28 85.39
SCNpilot_expt_1000_bf_scaffold_8891
Species: bacterium YEK0313 (50%)
10 6511 bp 62.25 4.84 94.46
SCNpilot_expt_1000_bf_scaffold_22098 10 6884 bp 60.59 3.70 75.70
SCNpilot_expt_1000_bf_scaffold_8133
Species: Brevundimonas diminuta (60%)
10 9080 bp 60.61 5.12 91.98
SCNpilot_expt_1000_bf_scaffold_8393
Order: Rhizobiales (70%)
10 7643 bp 61.11 4.94 83.76
SCNpilot_expt_1000_bf_scaffold_15414
Order: Rhizobiales (80%)
10 7551 bp 59.94 5.07 79.10
SCNpilot_expt_1000_bf_scaffold_11223
Order: Rhizobiales (70%)
10 9028 bp 58.42 4.60 67.12
Displaying items 101-150 of 913 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.