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scnpilot_dereplicated_Actinobacteria_2

scnpilot-dereplicated_Actinobacteria_70_1
In projects: SCNPILOT_EXPT_300_BF

Consensus taxonomy: Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Auto curated genome
Original version: SCNPILOT_EXPT_300_BF_Actinomycetales_72_7_partial

Properties

Avg. coverage: 1.00 Longest contig: 49.14 Kbp Bin length: 3.69 Mbp GC content: 70.44 %
Contigs count: 278 Features count: 4305 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 28 / 55 BSCG 30 / 51 MC: 1 ASCG 10 / 38 MC: 3
Displaying items 51-100 of 278 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_300_bf_scaffold_2468_curated
Class: Actinobacteria (55.56%)
18 12315 bp 70.91 1.00 91.79
SCNpilot_expt_300_bf_scaffold_1750_curated
Class: Actinobacteria (71.43%)
7 5592 bp 71.53 1.00 91.58
SCNpilot_expt_300_bf_scaffold_5337_curated
Domain: Bacteria (66.67%)
6 5716 bp 70.68 1.00 91.38
SCNpilot_expt_300_bf_scaffold_1550_curated
Phylum: Actinobacteria (50%)
8 6969 bp 70.94 1.00 91.30
SCNpilot_expt_300_bf_scaffold_6868_curated
Phylum: Actinobacteria (55.56%)
9 8375 bp 70.45 1.00 91.24
SCNpilot_expt_300_bf_scaffold_771_curated
Class: Actinobacteria (58.62%)
29 26506 bp 72.21 1.00 91.22
SCNpilot_expt_300_bf_scaffold_1549_curated
Phylum: Actinobacteria (50%)
12 15040 bp 71.22 1.00 91.20
SCNpilot_expt_300_bf_scaffold_7151_curated
Class: Actinobacteria (50%)
6 6850 bp 72.22 1.00 91.14
SCNpilot_expt_300_bf_scaffold_1611_curated
Class: Actinobacteria (80%)
10 10019 bp 71.60 1.00 91.12
SCNpilot_expt_300_bf_scaffold_1049_curated
Phylum: Actinobacteria (76.92%)
13 12987 bp 72.71 1.00 91.08
SCNpilot_expt_300_bf_scaffold_898_curated
Class: Actinobacteria (62.5%)
24 23102 bp 72.03 1.00 91.01
SCNpilot_expt_300_bf_scaffold_1073_curated
Class: Actinobacteria (65%)
20 19134 bp 72.02 1.00 91.00
SCNpilot_expt_300_bf_scaffold_2435_curated
Domain: Bacteria (54.55%)
11 9579 bp 71.43 1.00 90.76
SCNpilot_expt_300_bf_scaffold_1288_curated
Class: Actinobacteria (76.92%)
26 28316 bp 72.51 1.00 90.67
SCNpilot_expt_300_bf_scaffold_2281_curated
Class: Actinobacteria (62.5%)
8 7877 bp 71.47 1.00 90.61
SCNpilot_expt_300_bf_scaffold_11690_curated
Phylum: Actinobacteria (71.43%)
7 5277 bp 71.80 1.00 90.56
SCNpilot_expt_300_bf_scaffold_1004_curated
Phylum: Actinobacteria (58.06%)
31 27861 bp 72.82 1.00 90.56
SCNpilot_expt_300_bf_scaffold_971_curated
Class: Actinobacteria (59.09%)
22 26241 bp 71.58 1.00 90.44
SCNpilot_expt_300_bf_scaffold_2100_curated
Class: Actinobacteria (50%)
8 7632 bp 72.00 1.00 90.37
SCNpilot_expt_300_bf_scaffold_803_curated
Phylum: Actinobacteria (51.72%)
58 49137 bp 72.18 1.00 90.05
SCNpilot_expt_300_bf_scaffold_1164_curated
Class: Actinobacteria (69.23%)
13 8748 bp 72.14 1.00 90.02
SCNpilot_expt_300_bf_scaffold_1279_curated
Phylum: Actinobacteria (57.14%)
28 25758 bp 71.75 1.00 89.98
SCNpilot_expt_300_bf_scaffold_1310_curated
Class: Actinobacteria (52.94%)
17 18580 bp 71.36 1.00 89.95
SCNpilot_expt_300_bf_scaffold_4441_curated
Class: Actinobacteria (55.56%)
9 6317 bp 71.66 1.00 89.95
SCNpilot_expt_300_bf_scaffold_1130_curated
Domain: Bacteria (62.96%)
27 23922 bp 71.50 1.00 89.92
SCNpilot_expt_300_bf_scaffold_3131_curated
Domain: Bacteria (70%)
10 8032 bp 73.17 1.00 89.90
SCNpilot_expt_300_bf_scaffold_800_curated
Domain: Bacteria (61.54%)
26 24158 bp 72.80 1.00 89.88
SCNpilot_expt_300_bf_scaffold_2464_curated
Domain: Bacteria (55.56%)
9 6519 bp 67.91 1.00 89.88
SCNpilot_expt_300_bf_scaffold_688_curated
Domain: Bacteria (53.06%)
49 40456 bp 70.89 1.00 89.85
SCNpilot_expt_300_bf_scaffold_1911_curated
Order: Micrococcales (50%)
10 10663 bp 70.89 1.00 89.78
SCNpilot_expt_300_bf_scaffold_792_curated
Class: Actinobacteria (50%)
30 34248 bp 72.75 1.00 89.71
SCNpilot_expt_300_bf_scaffold_1075_curated
Class: Actinobacteria (54.17%)
24 22619 bp 72.39 1.00 89.43
SCNpilot_expt_300_bf_scaffold_5555_curated
Domain: Bacteria (70%)
10 6829 bp 71.64 1.00 89.40
SCNpilot_expt_300_bf_scaffold_2126_curated
Class: Actinobacteria (58.82%)
17 15131 bp 70.45 1.00 89.34
SCNpilot_expt_300_bf_scaffold_2560_curated
Domain: Bacteria (55.56%)
9 11641 bp 71.91 1.00 89.19
SCNpilot_expt_300_bf_scaffold_1596_curated
Phylum: Actinobacteria (70%)
10 8043 bp 71.91 1.00 89.11
SCNpilot_expt_300_bf_scaffold_1815_curated
Class: Actinobacteria (56.25%)
16 11360 bp 73.09 1.00 89.08
SCNpilot_expt_300_bf_scaffold_10266_curated 5 6255 bp 67.74 1.00 88.97
SCNpilot_expt_300_bf_scaffold_3657_curated
Domain: Bacteria (55.56%)
9 9291 bp 72.54 1.00 88.86
SCNpilot_expt_300_bf_scaffold_712_curated
Phylum: Actinobacteria (53.33%)
15 13533 bp 72.45 1.00 88.67
SCNpilot_expt_300_bf_scaffold_1265_curated
Class: Actinobacteria (50%)
6 7028 bp 73.19 1.00 88.53
SCNpilot_expt_300_bf_scaffold_3533_curated
Domain: Bacteria (71.43%)
7 8546 bp 70.70 1.00 88.50
SCNpilot_expt_300_bf_scaffold_1910_curated
Class: Actinobacteria (50%)
9 8942 bp 74.75 1.00 88.37
SCNpilot_expt_300_bf_scaffold_1812_curated 33 25218 bp 71.23 1.00 88.26
SCNpilot_expt_300_bf_scaffold_986_curated
Class: Actinobacteria (60%)
20 19500 bp 72.25 1.00 88.02
SCNpilot_expt_300_bf_scaffold_2399_curated
Class: Actinobacteria (87.5%)
8 7021 bp 72.14 1.00 87.98
SCNpilot_expt_300_bf_scaffold_3373_curated
Class: Actinobacteria (52.63%)
19 16828 bp 70.72 1.00 87.94
SCNpilot_expt_300_bf_scaffold_1437_curated
Phylum: Actinobacteria (56.25%)
16 14906 bp 71.43 1.00 87.91
SCNpilot_expt_300_bf_scaffold_3678_curated
Domain: Bacteria (57.89%)
19 17895 bp 68.98 1.00 87.90
SCNpilot_expt_300_bf_scaffold_1416_curated
Class: Actinobacteria (61.54%)
13 11564 bp 73.18 1.00 87.82
Displaying items 51-100 of 278 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.