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SCNpilot_expt_500_bf_scaffold_2415

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2415_1
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..399)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IER2_BEII9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB97002.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_expt_500_bf_scaffold_2415_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

501..1112
DNA (612bp) protein (204aa)
Resolvase helix-turn-helix domain protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VCJ0_SPHWW
Uncharacterized protein {ECO:0000313|EMBL:AJP74212.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
resolvase domain-containing protein
SCNpilot_expt_500_bf_scaffold_2415_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1285..1740
DNA (456bp) protein (152aa)
nodulation protein NodN n=1 Tax=Sphingomonas elodea RepID=UPI0002631DD6
Nodulation protein NodN {ECO:0000313|EMBL:AJP70975.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
MaoC-like dehydratase
SCNpilot_expt_500_bf_scaffold_2415_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2254..2979
DNA (726bp) protein (242aa)
Acetyl-CoA C-acyltransferase (EC:2.3.1.16); K00632 acetyl-CoA acyltransferase [EC:2.3.1.16]
acetyl-CoA acetyltransferase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D278FC
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:AJP70974.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_2415_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2979..3383
DNA (405bp) protein (135aa)
acetyl-CoA acetyltransferase (EC:2.3.1.16); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
acetyl-CoA acetyltransferase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D278FC
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:AJP70974.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_2415_6
unknown

Not on your lists

comp(3674..3766)
DNA (93bp) protein (31aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2415_7
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3863..4342)
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000382AF58
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCNpilot_expt_500_bf_scaffold_2415_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4584..5534
DNA (951bp) protein (317aa)
glk; glucokinase; K00845 glucokinase [EC:2.7.1.2]
glucokinase n=1 Tax=Sphingomonas elodea RepID=UPI0002631DD3 rbh
Glucokinase {ECO:0000313|EMBL:AJP70973.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_2415_9
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5611..5985
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D81569
Strain SA-120 Contig595, whole genome shotgun sequence {ECO:0000313|EMBL:KIT99851.1}; TaxID=46170 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus subsp. aureus.;"
conserved membrane protein of unknown function
SCNpilot_expt_500_bf_scaffold_2415_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6029..7261)
DNA (1233bp) protein (411aa)
polyhydroxyalkanoate depolymerase, intracellular n=1 Tax=Sphingomonas elodea RepID=UPI0002631DD8 rbh
Esterase {ECO:0000313|EMBL:AJP70954.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
polyhydroxyalkanoate depolymerase rbh
SCNpilot_expt_500_bf_scaffold_2415_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7536..9335
DNA (1800bp) protein (600aa)
ABC transporter ATP-binding protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631DD9 rbh
ABC transporter {ECO:0000313|EMBL:AJP70953.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
lipid ABC transporter ATPase/inner membrane protein
SCNpilot_expt_500_bf_scaffold_2415_12
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9446..9871)
DNA (426bp) protein (142aa)
Peroxiredoxin, Ohr subfamily n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EWF1_SPHCR
Organic hydroperoxide resistance protein {ECO:0000313|EMBL:KEQ54189.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
peroxiredoxin Ohr subfamily
SCNpilot_expt_500_bf_scaffold_2415_13
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10009..10413
DNA (405bp) protein (135aa)
MarR-family transcriptional regulator n=1 Tax=Sphingobium indicum B90A RepID=I5BE87_9SPHN
MarR-family transcriptional regulator {ECO:0000313|EMBL:EIM67889.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
MarR-family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_2415_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10616..11785
DNA (1170bp) protein (390aa)
saccharopine dehydrogenase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD1C3
Saccharopine dehydrogenase {ECO:0000313|EMBL:AJP70949.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
saccharopine dehydrogenase
SCNpilot_expt_500_bf_scaffold_2415_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11786..12127)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036BD3CB
Uncharacterized protein {ECO:0000313|EMBL:AJP70948.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_2415_16
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12245..14476)
DNA (2232bp) protein (744aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
ribonuclease R n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00036019FE rbh
ribonuclease R rbh
SCNpilot_expt_500_bf_scaffold_2415_17
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14531..15979
DNA (1449bp) protein (483aa)
glpD; glycerol-3-phosphate dehydrogenase; K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
glycerol-3-phosphate dehydrogenase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC012 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE52922.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCNpilot_expt_500_bf_scaffold_2415_18
unknown

Not on your lists

15976..16323
DNA (348bp) protein (116aa)
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2415_19
unknown

Not on your lists

16371..16703
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2415_20
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16777..17778)
DNA (1002bp) protein (334aa)
pectinesterase (EC:3.1.1.11); K01051 pectinesterase [EC:3.1.1.11]
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030F9EA9 rbh
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_expt_500_bf_scaffold_2415_21
unknown

Not on your lists

comp(17775..18368)
DNA (594bp) protein (198aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2415_22
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18446..19048)
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631031 rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP70945.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2415_23
Sphingomonas elodea, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(19111..20589)
DNA (1479bp) protein (493aa)
Proline--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000255|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_01571}; Short=ProRS {ECO:0000255|HAMAP-Rule:MF_01571};; TaxID=179878 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas elodea.;"
proS; prolyl-tRNA synthetase (EC:6.1.1.15); K01881 prolyl-tRNA synthetase [EC:6.1.1.15] rbh
Proline--tRNA ligase n=1 Tax=Sphingomonas elodea RepID=SYP_SPHEL rbh
SCNpilot_expt_500_bf_scaffold_2415_24
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20715..21356
DNA (642bp) protein (214aa)
Strain SA-120 Contig157, whole genome shotgun sequence {ECO:0000313|EMBL:KIU01620.1}; Flags: Fragment;; TaxID=46170 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus subsp. aureus.;"
SCNpilot_expt_500_bf_scaffold_2415_25
unknown

Not on your lists

comp(21231..22010)
DNA (780bp) protein (260aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2415_26
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22306..22887)
DNA (582bp) protein (194aa)
SAM-dependent methyltransferase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003177C67
SAM-dependent methyltransferase {ECO:0000313|EMBL:AJP70942.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2415_27
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22884..23402)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC019
Sphingomonas taxi strain 30a NODE_61, whole genome shotgun sequence {ECO:0000313|EMBL:KIU27422.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_2415_28
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23534..24007
DNA (474bp) protein (158aa)
Isoprenylcysteine carboxyl methyltransferase family protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QMX3_BREDI
hypothetical protein
Isoprenylcysteine carboxyl methyltransferase family protein {ECO:0000313|EMBL:EKY29339.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
SCNpilot_expt_500_bf_scaffold_2415_29
Paenibacillus polymyxa, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24017..24418)
DNA (402bp) protein (134aa)
Tail Collar domain protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E79D
Microcystin-dependent protein {ECO:0000313|EMBL:AIY10001.1}; TaxID=1406 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus polymyxa (Bacillus polymyxa).;"
Microcystin-dependent protein
SCNpilot_expt_500_bf_scaffold_2415_30
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24559..25974)
DNA (1416bp) protein (472aa)
Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|SAAS:SAAS00022796}; EC=1.4.4.2 {ECO:0000256|SAAS:SAAS00022796, ECO:0000313|EMBL:AJP70940.1};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
glycine dehydrogenase subunit 2 (EC:1.4.4.2)
glycine dehydrogenase subunit 2 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D995DB
Displaying items 1-30 of 42 in total

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