ggKbase home page

scnpilot_expt_750_bf_scaffold_468

Search features with annotation key words

Displaying items 1-30 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_bf_scaffold_468_1
unknown

Not on your lists

comp(256..447)
DNA (192bp) protein (64aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_468_2
unknown

Not on your lists

comp(811..1248)
DNA (438bp) protein (146aa)

This feature has no annotations

scnpilot_expt_750_bf_scaffold_468_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2049..19694)
DNA (17646bp) protein (5882aa)
YD repeat protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYG0_VARPS rbh
YD repeat protein {ECO:0000313|EMBL:ACS18919.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain
hypothetical protein
scnpilot_expt_750_bf_scaffold_468_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20099..20527
DNA (429bp) protein (143aa)
Putative signal-transduction protein containing cAMP-binding and CBS domain containing protein n=1 Tax=Variovorax sp. CF313 RepID=J2K351_9BURK
Putative signal-transduction protein containing cAMP-binding and CBS domain containing protein {ECO:0000313|EMBL:EJL74580.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkh
signal transduction protein with cbs domains
scnpilot_expt_750_bf_scaffold_468_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20645..21004
DNA (360bp) protein (120aa)
Sigma 54 modulation protein / S30EA ribosomal protein n=1 Tax=Variovorax sp. CF313 RepID=J3CMP8_9BURK
Sigma 54 modulation protein / S30EA ribosomal protein {ECO:0000313|EMBL:EJL74581.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;"
ribosomal subunit interface protein
scnpilot_expt_750_bf_scaffold_468_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20991..21479)
DNA (489bp) protein (163aa)
Putative transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2T934_9BURK
Putative transcriptional regulator {ECO:0000313|EMBL:EJL74582.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax
MerR family transcriptional regulator
scnpilot_expt_750_bf_scaffold_468_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21469..21891)
DNA (423bp) protein (141aa)
ketosteroid isomerase n=1 Tax=Variovorax paradoxus RepID=UPI000373E326
Ketosteroid isomerase-like protein {ECO:0000313|EMBL:EJL74583.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax
hypothetical protein
scnpilot_expt_750_bf_scaffold_468_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22009..22938)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CMF0_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL74584.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.
short-chain dehydrogenase/reductase SDR
scnpilot_expt_750_bf_scaffold_468_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23071..23559)
DNA (489bp) protein (163aa)
Response regulator receiver protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V764_VARPE
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ADU38360.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax
scnpilot_expt_750_bf_scaffold_468_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23651..25156)
DNA (1506bp) protein (502aa)
Glutamate--cysteine ligase {ECO:0000256|HAMAP-Rule:MF_00578, ECO:0000256|RuleBase:RU004391}; EC=6.3.2.2 {ECO:0000256|HAMAP-Rule:MF_00578, ECO:0000256|RuleBase:RU004391};; Gamma-ECS {ECO:0000256|HAMAP-
Glutamate--cysteine ligase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V765_VARPE rbh
glutamate/cysteine ligase
scnpilot_expt_750_bf_scaffold_468_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25379..25696)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2T936_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL74587.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.
antibiotic biosynthesis monooxygenase
scnpilot_expt_750_bf_scaffold_468_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25710..26372)
DNA (663bp) protein (221aa)
carboxylesterase (EC:3.1.1.1)
Carboxylesterase {ECO:0000313|EMBL:ACS20256.1}; EC=3.1.1.1 {ECO:0000313|EMBL:ACS20256.1};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovor
Carboxylesterase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CTR8_VARPS rbh
scnpilot_expt_750_bf_scaffold_468_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26488..26826
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V768_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU38364.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (
scnpilot_expt_750_bf_scaffold_468_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26842..27837)
DNA (996bp) protein (332aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037C59B7 rbh
Variovorax paradoxus strain MEDvA23 contig_76, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ23247.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
ABC transporter substrate-binding protein
scnpilot_expt_750_bf_scaffold_468_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27994..28494
DNA (501bp) protein (167aa)
Fe2+/Zn2+ uptake regulation protein n=1 Tax=Variovorax sp. CF313 RepID=J3CMF3_9BURK
Fe2+/Zn2+ uptake regulation protein {ECO:0000313|EMBL:EJL74589.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovora
hypothetical protein
scnpilot_expt_750_bf_scaffold_468_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28508..29701)
DNA (1194bp) protein (398aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035CC6CA rbh
Putative GTPase, G3E family {ECO:0000313|EMBL:EJL74590.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF
cobalamin synthesis protein p47k rbh
scnpilot_expt_750_bf_scaffold_468_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29805..30518)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CMQ4_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL74591.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.
hypothetical protein
scnpilot_expt_750_bf_scaffold_468_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30649..31548)
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2T940_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL74592.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.
short-chain dehydrogenase/reductase sdr
scnpilot_expt_750_bf_scaffold_468_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31592..32524)
DNA (933bp) protein (311aa)
AraC family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003627839 rbh
Variovorax paradoxus strain MEDvA23 contig_76, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ23240.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
AraC family transcriptional regulator
scnpilot_expt_750_bf_scaffold_468_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32553..33200
DNA (648bp) protein (216aa)
Glutathione S-transferase n=1 Tax=Variovorax sp. CF313 RepID=J2KNE0_9BURK rbh
Glutathione S-transferase {ECO:0000313|EMBL:EJL74593.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="
glutathione s-transferase domain-containing protein rbh
scnpilot_expt_750_bf_scaffold_468_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33201..34103)
DNA (903bp) protein (301aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V774_VARPE rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADU38370.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovo
scnpilot_expt_750_bf_scaffold_468_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34238..35560
DNA (1323bp) protein (441aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI00036555E5 rbh
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADU38371.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax
scnpilot_expt_750_bf_scaffold_468_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35601..36704
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V776_VARPE rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADU38372.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (
scnpilot_expt_750_bf_scaffold_468_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36814..37611)
DNA (798bp) protein (266aa)
Putative enoyl-CoA hydratase/isomerase n=1 Tax=Variovorax paradoxus B4 RepID=T1XEA9_VARPD rbh
putative enoyl-CoA hydratase/isomerase
Putative enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:AGU50846.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variov
scnpilot_expt_750_bf_scaffold_468_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37633..38013)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035FB36F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS20261.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Var
scnpilot_expt_750_bf_scaffold_468_26
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38116..38943)
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J1ES37_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJE54991.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.
scnpilot_expt_750_bf_scaffold_468_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38946..39218)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CMQ5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL74596.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.
hypothetical protein
scnpilot_expt_750_bf_scaffold_468_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39321..40517
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2T944_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL74597.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
hypothetical protein rbh
scnpilot_expt_750_bf_scaffold_468_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40547..40759
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KNE5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL74598.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.
hypothetical protein
scnpilot_expt_750_bf_scaffold_468_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40782..41690)
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V782_VARPE rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADU38378.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (
Displaying items 1-30 of 104 in total

View Taxonomy