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SCNPILOT_EXPT_750_BF_Rhizobiales_63_6_partial

SCNPILOT_EXPT_750_BF_Rhizobiales_63_6
In projects: SCNPILOT_EXPT_750_BF

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_750_bf_UNK

Properties

Avg. coverage: 6.39 Longest contig: 101.11 Kbp Bin length: 5.31 Mbp GC content: 63.21 %
Contigs count: 470 Features count: 5644 rRNAs count: 0 tRNAs count: 44

Genome completeness

megabin RP 44 / 55 MC: 15 BSCG 44 / 51 MC: 12 ASCG 9 / 38 MC: 2

Description

from ESOM, highly fragmented

Displaying items 301-350 of 470 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_bf_scaffold_1087
Species: Afipia broomeae (50%)
52 59215 bp 63.16 7.13 89.59
scnpilot_expt_750_bf_scaffold_2165
Genus: Afipia (73.33%)
15 10774 bp 63.17 6.45 89.72
scnpilot_expt_750_bf_scaffold_1088
Genus: Afipia (66.67%)
27 20634 bp 62.87 5.95 89.73
scnpilot_expt_750_bf_scaffold_2351
Class: Alphaproteobacteria (62.5%)
8 6556 bp 64.92 4.96 89.73
scnpilot_expt_750_bf_scaffold_2190
Class: Alphaproteobacteria (57.14%)
14 16438 bp 68.05 6.01 89.74
scnpilot_expt_750_bf_scaffold_1240
Genus: Afipia (56.25%)
16 15264 bp 62.05 6.60 89.76
scnpilot_expt_750_bf_scaffold_3306
Class: Alphaproteobacteria (71.43%)
7 6457 bp 62.72 4.65 89.76
scnpilot_expt_750_bf_scaffold_5374
Class: Alphaproteobacteria (77.78%)
9 9266 bp 61.95 5.64 89.78
scnpilot_expt_750_bf_scaffold_13735
Order: Rhizobiales (85.71%)
7 6374 bp 63.30 6.94 89.80
scnpilot_expt_750_bf_scaffold_1718
Order: Rhizobiales (71.43%)
7 8318 bp 65.88 6.04 89.81
scnpilot_expt_750_bf_scaffold_2143
Genus: Afipia (69.23%)
13 13777 bp 63.16 6.12 89.82
scnpilot_expt_750_bf_scaffold_1938
Species: Afipia broomeae (90%)
10 11722 bp 61.57 6.70 89.88
scnpilot_expt_750_bf_scaffold_902
Genus: Afipia (73.33%)
15 16389 bp 61.71 6.32 89.90
scnpilot_expt_750_bf_scaffold_1123
Species: Afipia broomeae (57.14%)
21 21324 bp 63.52 7.22 89.91
scnpilot_expt_750_bf_scaffold_3057
Genus: Afipia (58.33%)
12 12255 bp 61.77 4.88 89.91
scnpilot_expt_750_bf_scaffold_4706
Class: Alphaproteobacteria (75%)
4 5120 bp 64.73 6.30 89.94
scnpilot_expt_750_bf_scaffold_1246
Genus: Afipia (73.68%)
38 35302 bp 63.37 6.82 89.97
scnpilot_expt_750_bf_scaffold_7197
Class: Alphaproteobacteria (60%)
10 8089 bp 67.18 6.71 90.09
scnpilot_expt_750_bf_scaffold_5972
Class: Alphaproteobacteria (50%)
6 6989 bp 65.15 5.22 90.10
scnpilot_expt_750_bf_scaffold_6607
Domain: Bacteria (77.78%)
9 7397 bp 65.28 5.88 90.12
scnpilot_expt_750_bf_scaffold_7455
Order: Rhizobiales (50%)
6 5602 bp 66.64 6.20 90.13
scnpilot_expt_750_bf_scaffold_4731
Order: Rhizobiales (57.14%)
7 6656 bp 63.94 4.96 90.14
scnpilot_expt_750_bf_scaffold_5078
Class: Alphaproteobacteria (66.67%)
6 5390 bp 63.49 15.77 90.17
scnpilot_expt_750_bf_scaffold_2727
Species: Afipia broomeae (100%)
6 5868 bp 63.31 6.31 90.18
scnpilot_expt_750_bf_scaffold_3494
Species: Afipia broomeae (53.33%)
15 12762 bp 63.60 6.66 90.20
scnpilot_expt_750_bf_scaffold_3296
Phylum: Proteobacteria (71.43%)
7 7217 bp 66.41 6.06 90.20
scnpilot_expt_750_bf_scaffold_2748
Order: Rhizobiales (81.25%)
16 14959 bp 58.94 5.88 90.27
scnpilot_expt_750_bf_scaffold_7845
Class: Alphaproteobacteria (54.55%)
11 7762 bp 64.93 6.51 90.32
scnpilot_expt_750_bf_scaffold_10993
Order: Rhizobiales (57.14%)
7 5194 bp 64.77 5.82 90.34
scnpilot_expt_750_bf_scaffold_3457
Genus: Afipia (85.71%)
7 5635 bp 60.30 6.12 90.35
scnpilot_expt_750_bf_scaffold_3303
Phylum: Proteobacteria (57.14%)
7 5131 bp 63.38 6.58 90.39
scnpilot_expt_750_bf_scaffold_4862
Order: Rhizobiales (71.43%)
7 6631 bp 64.64 5.84 90.48
scnpilot_expt_750_bf_scaffold_3044
Class: Alphaproteobacteria (50%)
6 5432 bp 66.90 5.57 90.52
scnpilot_expt_750_bf_scaffold_2461
Class: Alphaproteobacteria (50%)
6 6335 bp 65.07 5.13 90.54
scnpilot_expt_750_bf_scaffold_1711
Genus: Afipia (58.33%)
12 13452 bp 63.17 7.19 90.57
scnpilot_expt_750_bf_scaffold_1742
Class: Alphaproteobacteria (60%)
10 10103 bp 65.88 5.59 90.60
scnpilot_expt_750_bf_scaffold_2492
Species: Afipia broomeae (50%)
6 6275 bp 62.69 8.09 90.60
scnpilot_expt_750_bf_scaffold_3907
Phylum: Proteobacteria (60%)
10 8227 bp 64.92 4.92 90.65
scnpilot_expt_750_bf_scaffold_1370
Order: Rhizobiales (70%)
30 29446 bp 59.06 6.06 90.65
scnpilot_expt_750_bf_scaffold_1035
Genus: Afipia (66.67%)
18 17285 bp 62.48 7.07 90.72
scnpilot_expt_750_bf_scaffold_5936
Genus: Afipia (66.67%)
15 10286 bp 62.67 6.64 90.79
scnpilot_expt_750_bf_scaffold_4309
Order: Rhizobiales (50%)
8 7084 bp 66.40 6.14 90.80
scnpilot_expt_750_bf_scaffold_1259
Order: Rhizobiales (54.17%)
24 18988 bp 64.16 6.23 90.80
scnpilot_expt_750_bf_scaffold_2152
Species: Afipia broomeae (57.69%)
26 25356 bp 63.69 7.15 90.89
scnpilot_expt_750_bf_scaffold_1972
Class: Alphaproteobacteria (62.5%)
8 7490 bp 65.43 5.87 90.92
scnpilot_expt_750_bf_scaffold_2654
Species: Hyphomicrobium nitrativorans (57.14%)
7 7192 bp 66.18 6.88 90.93
scnpilot_expt_750_bf_scaffold_2275
Species: bacterium YEK0313 (61.54%)
13 10834 bp 63.82 5.47 90.94
scnpilot_expt_750_bf_scaffold_2628
Phylum: Proteobacteria (57.14%)
7 8641 bp 63.60 5.64 90.96
scnpilot_expt_750_bf_scaffold_7404
Class: Alphaproteobacteria (60%)
5 5147 bp 64.23 3.98 90.99
scnpilot_expt_750_bf_scaffold_2742
Species: Afipia broomeae (63.64%)
11 10119 bp 63.78 7.26 91.02
Displaying items 301-350 of 470 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.