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scnpilot_solids2_trim150_scaffold_105

Search features with annotation key words

Displaying items 1-30 of 111 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_105_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1384)
DNA (1383bp) protein (461aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJ62_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97308.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_solids2_trim150_scaffold_105_2
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2084..4048
DNA (1965bp) protein (655aa)
Glycyl aminopeptidase n=1 Tax=Rhodanobacter denitrificans RepID=M4NFI4_9GAMM
Peptidase M61 {ECO:0000313|EMBL:KGI78409.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
glycyl aminopeptidase
scnpilot_solids2_trim150_scaffold_105_3
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4071..4487)
DNA (417bp) protein (139aa)
3-demethylubiquinone-9 3-methyltransferase domain protein, putative n=1 Tax=Alcanivorax sp. DG881 RepID=B4WX30_9GAMM
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:KGO99432.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain-containing protein; K04750 PhnB protein
scnpilot_solids2_trim150_scaffold_105_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4783..5391
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WP58_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM01250.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_105_5
unknown

Not on your lists

comp(5501..5716)
DNA (216bp) protein (72aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_105_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6534..7310
DNA (777bp) protein (259aa)
Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C n=1 Tax=Rhodanobacter denitrificans RepID=I4WS68_9GAMM
pyrroloquinoline quinone (coenzyme PQQ) biosynthesis protein C
Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C {ECO:0000313|EMBL:AGG89395.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_105_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7374..10130
DNA (2757bp) protein (919aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VME6_9GAMM
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EIL88387.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
scnpilot_solids2_trim150_scaffold_105_8
S_OP1_64_32, KB1, Bacteria

Not on your lists

comp(10238..10660)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=candidate division OP9 bacterium OP9-77CS RepID=UPI000367D98E
twitching motility protein PilT
Tax=S_OP1_64_32
scnpilot_solids2_trim150_scaffold_105_9
Agrococcus pavilionensis, Agrococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10657..10893)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Agrococcus pavilionensis RW1 RepID=U1MU14_9MICO
Uncharacterized protein {ECO:0000313|EMBL:ERG65431.1}; TaxID=1330458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agrococcus.;" source="Agrococcus pavilionensis RW1.;"
prevent-host-death family protein
scnpilot_solids2_trim150_scaffold_105_10
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10966..12636)
DNA (1671bp) protein (557aa)
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
urocanate hydratase (EC:4.2.1.49)
Urocanate hydratase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W010_9GAMM
scnpilot_solids2_trim150_scaffold_105_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12771..14663)
DNA (1893bp) protein (631aa)
Histidine ammonia-lyase n=1 Tax=Rhodanobacter denitrificans RepID=I4WLN6_9GAMM
Histidine ammonia-lyase {ECO:0000313|EMBL:EIL99982.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
histidine ammonia-lyase
scnpilot_solids2_trim150_scaffold_105_12
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15012..15743
DNA (732bp) protein (244aa)
GntR family transcriptional regulator n=1 Tax=Xanthomonas sacchari RepID=UPI000262AB65
GntR family transcriptional regulator {ECO:0000313|EMBL:AJC47471.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hutC; transcriptional regulator; K05836 GntR family transcriptional regulator, histidine utilization repressor
scnpilot_solids2_trim150_scaffold_105_13
Knoellia sinensis, Knoellia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15880..16683)
DNA (804bp) protein (268aa)
Putative uncharacterized protein n=1 Tax=Mobilicoccus pelagius NBRC 104925 RepID=H5UVF1_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KGN31444.1}; TaxID=1385520 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Knoellia.;" source="Knoellia sinensis KCTC 19936.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_105_14

Not on your lists

comp(16750..19884)
DNA (3135bp) protein (1045aa)
Glycosyl hydrolase, BNR repeat-containing protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T1B506_9ZZZZ
Glycosyl hydrolase, BNR repeat-containing protein {ECO:0000313|EMBL:EQD49310.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
BNR repeat-containing glycosyl hydrolase
scnpilot_solids2_trim150_scaffold_105_15
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20053..21534)
DNA (1482bp) protein (494aa)
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L6A7_FRAAD
acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase {ECO:0000313|EMBL:AFC86784.1}; Flags: Precursor;; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
scnpilot_solids2_trim150_scaffold_105_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21625..24495)
DNA (2871bp) protein (957aa)
Outer membrane receptor for ferrienterochelin and colicins n=8 Tax=Rhodanobacter denitrificans RepID=M4NAP4_9GAMM
outer membrane receptor for ferrienterochelin and colicins
Outer membrane receptor for ferrienterochelin and colicins {ECO:0000313|EMBL:AGG87579.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_105_17
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24620..27223)
DNA (2604bp) protein (868aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0G626_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA99160.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_105_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27782..29359
DNA (1578bp) protein (526aa)
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase (EC:3.2.2.21 2.1.1.63)
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase {ECO:0000313|EMBL:AGG89447.1}; EC=2.1.1.63 {ECO:0000313|EMBL:AGG89447.1};; EC=3.2.2.21 {ECO:0000313|EMBL:AGG89447.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase n=1 Tax=Rhodanobacter denitrificans RepID=M4NH75_9GAMM
scnpilot_solids2_trim150_scaffold_105_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29361..29876
DNA (516bp) protein (172aa)
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; EC=2.1.1.63 {ECO:0000256|HAMAP-Rule:MF_00772};; 6-O-methylguanine-DNA methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; O-6-methylguanine-DNA-alkyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W014_9GAMM
O-6-methylguanine DNA methyltransferase
scnpilot_solids2_trim150_scaffold_105_20
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29890..30318)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTI3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90524.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_105_21
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(30421..31953)
DNA (1533bp) protein (511aa)
Amidohydrolase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q025P8_SOLUE
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:ABJ83271.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
scnpilot_solids2_trim150_scaffold_105_22
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32154..33407)
DNA (1254bp) protein (418aa)
Major facilitator family transporter n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VN19_9GAMM
arabinose efflux permease family protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_105_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33404..34804)
DNA (1401bp) protein (467aa)
formimidoylglutamate deiminase (EC:3.5.3.13)
Formimidoylglutamate deiminase {ECO:0000313|EMBL:AGG89458.1}; EC=3.5.3.13 {ECO:0000313|EMBL:AGG89458.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Formimidoylglutamate deiminase n=1 Tax=Rhodanobacter denitrificans RepID=M4NIG5_9GAMM
scnpilot_solids2_trim150_scaffold_105_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34849..36480
DNA (1632bp) protein (544aa)
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WE50_9GAMM
putative amidohydrolase
Putative amidohydrolase {ECO:0000313|EMBL:AGG89459.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_105_25
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36477..37706
DNA (1230bp) protein (410aa)
Imidazolonepropionase {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112}; EC=3.5.2.7 {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112};; Imidazolone-5-propionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00372}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
imidazolonepropionase (EC:3.5.2.7)
Imidazolonepropionase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VN23_9GAMM
scnpilot_solids2_trim150_scaffold_105_26
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37701..38702)
DNA (1002bp) protein (334aa)
Tetraacyldisaccharide 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093884}; EC=2.7.1.130 {ECO:0000256|HAMAP-Rule:MF_00409, ECO:0000256|SAAS:SAAS00093878};; Lipid A 4'-kinase {ECO:0000256|HAMAP-Rule:MF_00409}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Tetraacyldisaccharide 4'-kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W024_9GAMM
tetraacyldisaccharide 4''-kinase
scnpilot_solids2_trim150_scaffold_105_27
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38713..40497)
DNA (1785bp) protein (595aa)
Lipid A export ATP-binding/permease protein MsbA {ECO:0000256|HAMAP-Rule:MF_01703}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01703};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Lipid A export permease/ATP-binding protein MsbA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VN25_9GAMM
lipid A export permease/ATP-binding protein MsbA
scnpilot_solids2_trim150_scaffold_105_28
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40494..40925)
DNA (432bp) protein (144aa)
Biopolymer transport protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPB5_9GAMM
Biopolymer transport protein {ECO:0000313|EMBL:EIM01307.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
biopolymer transport protein
scnpilot_solids2_trim150_scaffold_105_29
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40932..41594)
DNA (663bp) protein (221aa)
Biopolymer transport protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W027_9GAMM
Biopolymer transport protein {ECO:0000313|EMBL:EIL92818.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
biopolymer transport protein
scnpilot_solids2_trim150_scaffold_105_30
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41706..44018)
DNA (2313bp) protein (771aa)
DNA internalization-related competence protein ComEC/Rec2 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W028_9GAMM
DNA internalization-related competence protein ComEC/Rec2 {ECO:0000313|EMBL:EIL92819.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
DNA internalization-related competence protein ComEC/Rec2
Displaying items 1-30 of 111 in total

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