ggKbase home page

scnpilot_solids2_trim150_scaffold_50

Search features with annotation key words

Displaying items 1-30 of 165 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_50_1
Salinispora tropica, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

376..696
DNA (321bp) protein (107aa)
thioredoxin reductase n=1 Tax=Salinispora tropica RepID=UPI00036DAAA4
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ABP53641.1}; TaxID=369723 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440).;"
scnpilot_solids2_trim150_scaffold_50_2
Gordonia amarae, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(725..1372)
DNA (648bp) protein (216aa)
Putative uncharacterized protein n=1 Tax=Gordonia amarae NBRC 15530 RepID=G7GT97_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:GAB06822.1}; TaxID=1075090 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia amarae NBRC 15530.;"
Antibiotic biosynthesis monooxygenase
scnpilot_solids2_trim150_scaffold_50_3
Mesorhizobium sp. UASWS1009, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1360..1881)
DNA (522bp) protein (174aa)
acetyltransferase; K03830 putative acetyltransferase [EC:2.3.1.-]
acetyltransferase n=1 Tax=Salinibacterium sp. PAMC 21357 RepID=UPI000288E92E
Contig120, whole genome shotgun sequence {ECO:0000313|EMBL:KIU54852.1}; TaxID=1566387 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. UASWS1009.;"
scnpilot_solids2_trim150_scaffold_50_4
Nocardioides luteus, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1928..2299)
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Nocardioides sp. Iso805N RepID=UPI00035EEA94
ArsR family transcriptional regulator {ECO:0000313|EMBL:KJR09230.1}; TaxID=1844 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides luteus.;"
ArsR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_50_5
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2386..3195
DNA (810bp) protein (270aa)
Methyltransferase type 11 n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SN58_NOCSJ rbh
type 11 methyltransferase rbh
Methyltransferase type 11 {ECO:0000313|EMBL:ABL83243.1}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
scnpilot_solids2_trim150_scaffold_50_6
Rhodococcus wratislaviensis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3188..4303
DNA (1116bp) protein (372aa)
arsenic transporter n=1 Tax=Demetria terragena RepID=UPI000382B666
Arsenical pump membrane protein {ECO:0000313|EMBL:GAF50164.1}; TaxID=1219028 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus wratislaviensis NBRC 100605.;"
Arsenical-resistance protein
scnpilot_solids2_trim150_scaffold_50_7
Prauserella sp. Am3, Prauserella, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4300..4704
DNA (405bp) protein (135aa)
Heat-shock protein HtpX n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K4D9_9MICO
Protein-tyrosine-phosphatase {ECO:0000313|EMBL:KID31083.1}; TaxID=1515610 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Prauserella.;" source="Prauserella sp. Am3.;"
arsC; arsenate reductase
scnpilot_solids2_trim150_scaffold_50_8
Corynebacterium vitaeruminis, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4778..5158)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Leifsonia sp. 109 RepID=UPI00036DC1E5
Uncharacterized protein {ECO:0000313|EMBL:AHI23047.1}; TaxID=1224164 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium vitaeruminis DSM 20294.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_50_9
Streptomyces griseoflavus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5155..5592)
DNA (438bp) protein (146aa)
cupin n=1 Tax=Streptomyces sp. AA1529 RepID=UPI000302D4C6
Cupin domain-containing protein {ECO:0000313|EMBL:EFL38089.1}; Flags: Fragment;; TaxID=467200 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces griseoflavus Tu4000.;"
Cupin domain-containing protein
scnpilot_solids2_trim150_scaffold_50_10
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5610..5774)
DNA (165bp) protein (55aa)
General stress protein 69 {ECO:0000313|EMBL:KJL25845.1}; EC=1.1.1.- {ECO:0000313|EMBL:KJL25845.1};; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
aldehyde oxidase n=1 Tax=Microbacterium barkeri RepID=UPI0002E0FE7F
aldo/keto reductase
scnpilot_solids2_trim150_scaffold_50_11
Brachybacterium phenoliresistens, Brachybacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5972..6337)
DNA (366bp) protein (122aa)
Uncharacterized protein {ECO:0000313|EMBL:EWS82449.1}; TaxID=396014 species="Bacteria; Actinobacteria; Micrococcales; Dermabacteraceae; Brachybacterium.;" source="Brachybacterium phenoliresistens.;"
scnpilot_solids2_trim150_scaffold_50_12
unknown

Not on your lists

6876..7190
DNA (315bp) protein (105aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_50_13
Mesorhizobium sp. UASWS1009, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7136..7390)
DNA (255bp) protein (85aa)
XRE family transcriptional regulator n=1 Tax=Brevibacterium linens RepID=UPI0001BC2EB9
Contig120, whole genome shotgun sequence {ECO:0000313|EMBL:KIU54857.1}; TaxID=1566387 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. UASWS1009.;"
plasmid maintenance system antidote-like protein
scnpilot_solids2_trim150_scaffold_50_14
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7826..8104)
DNA (279bp) protein (93aa)
aldoketomutase n=1 Tax=Curtobacterium sp. B18 RepID=UPI0003B475BB
Aldoketomutase {ECO:0000313|EMBL:KDP91077.1}; TaxID=1291006 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter cf. michiganensis LMG 26808.;"
glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein 14
scnpilot_solids2_trim150_scaffold_50_15
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8409..9749
DNA (1341bp) protein (447aa)
Integrase/recombinase n=1 Tax=Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 RepID=M5BBX6_9MICO rbh
integrase/recombinase rbh
Integrase/recombinase {ECO:0000313|EMBL:CCE76120.1}; TaxID=1097677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. nebraskensis NCPPB 2581.;"
scnpilot_solids2_trim150_scaffold_50_16
unknown

Not on your lists

comp(9933..10130)
DNA (198bp) protein (66aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_50_17
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10523..10846
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003644D59
Uncharacterized protein {ECO:0000313|EMBL:KJL22880.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
scnpilot_solids2_trim150_scaffold_50_18
Tetrasphaera jenkinsii, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10957..11283)
DNA (327bp) protein (109aa)
Uncharacterized protein {ECO:0000313|EMBL:CCI52178.1}; TaxID=1193518 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera jenkinsii Ben 74.;"
scnpilot_solids2_trim150_scaffold_50_19
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11635..12291)
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034AF12A rbh
Recombinase {ECO:0000313|EMBL:EYT58815.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
recombinase rbh
scnpilot_solids2_trim150_scaffold_50_20
unknown

Not on your lists

comp(12294..12581)
DNA (288bp) protein (96aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_50_21
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12906..13478)
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 RepID=M5BA89_9MICO
Contig_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIP95842.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_50_22
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13475..13783)
DNA (309bp) protein (103aa)
Contig_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIP95841.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
scnpilot_solids2_trim150_scaffold_50_23
Actinomyces urogenitalis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14009..15112)
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W524_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:ETJ03751.1}; TaxID=1403939 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces urogenitalis DORA_12.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_50_24
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15109..15837)
DNA (729bp) protein (243aa)
DNA primase/polymerase n=1 Tax=Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 RepID=M5BAB2_9MICO rbh
DNA primase/polymerase rbh
DNA primase/polymerase {ECO:0000313|EMBL:CCE76131.1}; TaxID=1097677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. nebraskensis NCPPB 2581.;"
scnpilot_solids2_trim150_scaffold_50_25
unknown

Not on your lists

comp(15834..16226)
DNA (393bp) protein (131aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_50_26
unknown

Not on your lists

comp(16223..16396)
DNA (174bp) protein (58aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_50_27
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17035..17427
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0002E5BDAE
Uncharacterized protein {ECO:0000313|EMBL:KHK99987.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
glutamine phosphoribosylpyrophosphate amidotransferase
scnpilot_solids2_trim150_scaffold_50_28
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17489..18559)
DNA (1071bp) protein (357aa)
GTP-binding protein YchF n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034C9F6C rbh
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
GTPase, probable translation factor; K06942 rbh
scnpilot_solids2_trim150_scaffold_50_29
unknown

Not on your lists

comp(18607..18825)
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Arthrobacter sp. TB 23 RepID=UPI00035C7F56
scnpilot_solids2_trim150_scaffold_50_30
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19099..19839)
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K9K4_9MICO rbh
SAM-dependent methyltransferase {ECO:0000313|EMBL:KDA06529.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
SAM-dependent methyltransferase
Displaying items 1-30 of 165 in total

View Taxonomy