ggKbase home page

scnpilot_solids2_trim150_scaffold_50

Search features with annotation key words

Displaying items 91-120 of 165 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_50_90
Agrococcus pavilionensis, Agrococcus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(82003..85356)
DNA (3354bp) protein (1118aa)
ABC transporter ATP-binding protein n=1 Tax=Ruania albidiflava RepID=UPI0003B60E65 rbh
Uncharacterized protein {ECO:0000313|EMBL:ERG65133.1}; TaxID=1330458 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agrococcus.;" source="Agrococcus pavilionensis RW1.;"
cydD; ATP-binding/permease protein CydD rbh
scnpilot_solids2_trim150_scaffold_50_91
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(85565..89104)
DNA (3540bp) protein (1180aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
mfd; transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] rbh
transcription-repair coupling factor n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000345EBA5 rbh
scnpilot_solids2_trim150_scaffold_50_92
Dietzia sp. UCD-THP, Dietzia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(89114..90019)
DNA (906bp) protein (302aa)
hypothetical protein n=1 Tax=Dietzia sp. UCD-THP RepID=UPI00036E1F6D
Permease {ECO:0000313|EMBL:EYT64453.1}; TaxID=1292020 species="Bacteria; Actinobacteria; Corynebacteriales; Dietziaceae; Dietzia.;" source="Dietzia sp. UCD-THP.;"
rarD; RarD protein; K05786 chloramphenicol-sensitive protein RarD
scnpilot_solids2_trim150_scaffold_50_93
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

90229..90792
DNA (564bp) protein (188aa)
Putative ribosomal N-acetyltransferase YdaF {ECO:0000313|EMBL:KJL20717.1}; EC=2.3.1.- {ECO:0000313|EMBL:KJL20717.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F05D99
putative acetyltransferase
scnpilot_solids2_trim150_scaffold_50_94
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

90833..91696
DNA (864bp) protein (288aa)
mutM2; formamidopyrimidine-DNA glycosylase; K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] rbh
DNA lyase n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KP87_9MICO rbh
DNA lyase {ECO:0000313|EMBL:EQM78522.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
scnpilot_solids2_trim150_scaffold_50_95
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

91942..92979
DNA (1038bp) protein (346aa)
ribD; pyrimidine reductase, riboflavin biosynthesis; K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] rbh
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003467776 rbh
Riboflavin biosynthesis protein RibD {ECO:0000313|EMBL:KJL20715.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
scnpilot_solids2_trim150_scaffold_50_96
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

92979..93620
DNA (642bp) protein (214aa)
ribC; riboflavin synthase, alpha subunit (EC:2.5.1.9)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002EE9862 rbh
Riboflavin synthase subunit alpha {ECO:0000313|EMBL:KDA06477.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
scnpilot_solids2_trim150_scaffold_50_97
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

93617..94891
DNA (1275bp) protein (425aa)
ribA; 3,4-dihydroxy-2-butanone 4-phosphate synthase; K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] rbh
Riboflavin biosynthesis protein RibA n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K2T2_9MICO rbh
Riboflavin biosynthesis protein RibBA {ECO:0000256|SAAS:SAAS00280052}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
scnpilot_solids2_trim150_scaffold_50_98
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

94888..95361
DNA (474bp) protein (158aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
ribH; riboflavin synthase beta-chain; K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034797AD
scnpilot_solids2_trim150_scaffold_50_99
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(95389..95814)
DNA (426bp) protein (142aa)
conjugal transfer protein TrbL n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B667B6
Conjugal transfer protein TrbL {ECO:0000313|EMBL:KHK99518.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_50_100
Mycobacterium sinense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(95891..96193)
DNA (303bp) protein (101aa)
antitoxin n=1 Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0002628C91
prevent-host-death family protein
Prevent-host-death family protein {ECO:0000313|EMBL:AEF36888.1}; TaxID=875328 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium sp. (strain JDM601).;"
scnpilot_solids2_trim150_scaffold_50_101
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(96253..96636)
DNA (384bp) protein (128aa)
Phosphorylated carbohydrates phosphatase {ECO:0000313|EMBL:KJQ53478.1}; EC=3.1.3.- {ECO:0000313|EMBL:KJQ53478.1};; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KCD7_9MICO
hydrolase; K07025 putative hydrolase of the HAD superfamily
scnpilot_solids2_trim150_scaffold_50_102
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

96728..96934
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002FC05A6
Uncharacterized protein {ECO:0000313|EMBL:KJL33590.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
HSP18 transcription regulator
scnpilot_solids2_trim150_scaffold_50_103
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(96936..97310)
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI000375A70B
Twitching motility protein PilT {ECO:0000313|EMBL:KDA06473.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
PIN domain-containing protein
scnpilot_solids2_trim150_scaffold_50_104
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(97291..97569)
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00036192FD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB76282.1}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
scnpilot_solids2_trim150_scaffold_50_105
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

97712..99613
DNA (1902bp) protein (634aa)
Multidrug resistance ABC transporter ATP-binding/permease protein BmrA {ECO:0000313|EMBL:KJL25308.1}; EC=3.6.3.- {ECO:0000313|EMBL:KJL25308.1};; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
ABC transporter n=1 Tax=Microbacterium barkeri RepID=UPI0002E5F299 rbh
multidrug ABC transporter ATPase/permease; K06147 ATP-binding cassette, subfamily B, bacterial rbh
scnpilot_solids2_trim150_scaffold_50_106
Mycobacterium thermoresistibile, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(99912..100358)
DNA (447bp) protein (149aa)
hemerythrin n=1 Tax=Humibacter albus RepID=UPI0003B73E9E
Hemerythrin HHE cation binding domain-containing protein {ECO:0000313|EMBL:EHI11993.1}; TaxID=1078020 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium thermoresistibile ATCC 19527.;"
hemerythrin HHE cation binding domain-containing protein
scnpilot_solids2_trim150_scaffold_50_107
Mycobacterium intracellulare, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(100358..100801)
DNA (444bp) protein (148aa)
osmotically inducible protein OsmC n=1 Tax=Ruania albidiflava RepID=UPI0003B6ADE3
OsmC family protein
Peroxiredoxin, OsmC subfamily protein {ECO:0000313|EMBL:ETZ32442.1}; TaxID=1335421 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).;" source="Mycobacterium intracellulare MIN_052511_1280.;"
scnpilot_solids2_trim150_scaffold_50_108
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(100966..102837)
DNA (1872bp) protein (624aa)
Phosphoenolpyruvate carboxykinase [GTP] {ECO:0000256|HAMAP-Rule:MF_00452}; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00452};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00452};; EC=4.1.1.32 {ECO:0000256|HAMAP-Rule:MF_00452};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
pckG; phosphoenolpyruvate carboxykinase (GTP); K01596 phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32] rbh
Phosphoenolpyruvate carboxykinase [GTP] n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KF52_9MICO rbh
scnpilot_solids2_trim150_scaffold_50_109
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

102949..104391
DNA (1443bp) protein (481aa)
XRE family transcriptional regulator n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KHB0_9MICO rbh
Anaerobic benzoate catabolism transcriptional regulator {ECO:0000313|EMBL:KJL20705.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hipB; transcriptional regulator rbh
scnpilot_solids2_trim150_scaffold_50_110
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(104619..105398)
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Rhodococcus rhodochrous RepID=UPI0003664408
Uncharacterized protein {ECO:0000313|EMBL:KJL32569.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_50_111
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(105434..106465)
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KCD2_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:KJL24756.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_50_112
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(106705..108153)
DNA (1449bp) protein (483aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000313|EMBL:KJQ53470.1}; EC=1.2.1.12 {ECO:0000313|EMBL:KJQ53470.1};; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
gap; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12); K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] rbh
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K2R7_9MICO rbh
scnpilot_solids2_trim150_scaffold_50_113
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(108340..108723)
DNA (384bp) protein (128aa)
D-ribose pyranase {ECO:0000256|HAMAP-Rule:MF_01661, ECO:0000256|SAAS:SAAS00011477}; EC=5.4.99.62 {ECO:0000256|HAMAP-Rule:MF_01661, ECO:0000256|SAAS:SAAS00166232};; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium sp. MEB024.;"
protein RbsD; K06726 D-ribose pyranase [EC:5.-.-.-]
ribose pyranase n=1 Tax=Streptomyces sp. PsTaAH-124 RepID=UPI0003676CE6
scnpilot_solids2_trim150_scaffold_50_114
Cryobacterium sp. MLB-32, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(108720..109703)
DNA (984bp) protein (328aa)
sugar kinase, ribokinase; K00852 ribokinase [EC:2.7.1.15] rbh
Sugar kinase, ribokinase n=1 Tax=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) RepID=D1BIN9_SANKS rbh
Ribokinase {ECO:0000313|EMBL:KFF60747.1}; TaxID=1529318 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium sp. MLB-32.;"
scnpilot_solids2_trim150_scaffold_50_115
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(109700..110647)
DNA (948bp) protein (316aa)
Sugar-binding domain protein n=1 Tax=Corynebacterium ammoniagenes DSM 20306 RepID=D5P0F2_CORAM rbh
Contig_37, whole genome shotgun sequence {ECO:0000313|EMBL:KIU02913.1}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium sp. MEB024.;"
monosaccharide-binding protein; K10439 ribose transport system substrate-binding protein rbh
scnpilot_solids2_trim150_scaffold_50_116
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(110711..111682)
DNA (972bp) protein (324aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Corynebacterium ammoniagenes DSM 20306 RepID=D5P0F1_CORAM rbh
Contig_37, whole genome shotgun sequence {ECO:0000313|EMBL:KIU02912.1}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium sp. MEB024.;"
ribose ABC transporter rbh
scnpilot_solids2_trim150_scaffold_50_117
Cryobacterium sp. MLB-32, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(111694..113211)
DNA (1518bp) protein (506aa)
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; TaxID=1529318 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium sp. MLB-32.;"
Uncharacterized protein n=1 Tax=Corynebacterium maris DSM 45190 RepID=S5TGQ9_9CORY rbh
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_50_118
Cryobacterium sp. MLB-32, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(113211..114281)
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=Streptomyces niveus NCIMB 11891 RepID=V6KR99_STRNV rbh
Transcriptional regulator {ECO:0000313|EMBL:KFF60744.1}; TaxID=1529318 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium sp. MLB-32.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator rbh
scnpilot_solids2_trim150_scaffold_50_119
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(114389..115495)
DNA (1107bp) protein (369aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002D9F65E rbh
Uncharacterized protein {ECO:0000313|EMBL:EQM82273.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
hypothetical protein
Displaying items 91-120 of 165 in total

View Taxonomy