ggKbase home page

scnpilot_solids2_trim150_scaffold_86

Search features with annotation key words

Displaying items 271-291 of 291 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_86_263
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(257205..258326)
-----------------
DNA (1122bp)
protein (374aa)
ABC-type xylose transport system, periplasmic component n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NA41_MICTS rbh
ABC xylose transport system, periplasmic component; K10546 putative multiple sugar transport system substrate-binding protein rbh
ABC-type xylose transport system, periplasmic component {ECO:0000313|EMBL:BAJ75871.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
scnpilot_solids2_trim150_scaffold_86_264
unknown

Not on your lists

comp(258323..258787)
-----------------
DNA (465bp)
protein (155aa)
L-ribulose-5-phosphate 4-epimerase id=7720901 bin=CNBR_ACT species=Clavibacter michiganensis genus=Clavibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
scnpilot_solids2_trim150_scaffold_86_265
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(258934..259983)
-----------------
DNA (1050bp)
protein (350aa)
LacI family transcriptional regulator id=7719971 bin=CNBR_ACT species=Clavibacter michiganensis genus=Clavibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:AJW79742.1}; TaxID=33014 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. insidiosus.;"
transcriptional regulator, LacI family rbh
scnpilot_solids2_trim150_scaffold_86_266
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

260059..261897
-----------------
DNA (1839bp)
protein (613aa)
ABC transporter ATPase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034C4CCF rbh
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJL20760.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
ATPase components of ABC transporters with duplicated ATPase domains rbh
scnpilot_solids2_trim150_scaffold_86_267
Terrabacter sp. 28, Terrabacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

262159..262995
-----------------
DNA (837bp)
protein (279aa)
Extracellular solute-binding protein family 3 n=1 Tax=Verrucosispora maris (strain AB-18-032) RepID=F4F6T7_VERMA rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJK10474.1}; TaxID=1619947 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Terrabacter.;" source="Terrabacter sp. 28.;"
family 3 extracellular solute-binding protein rbh
scnpilot_solids2_trim150_scaffold_86_268
Bifidobacterium subtile, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

263024..263806
-----------------
DNA (783bp)
protein (261aa)
hypothetical protein n=1 Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI000364BD51 rbh
Amino acid ABC transporter permease {ECO:0000313|EMBL:KFJ04573.1}; TaxID=77635 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium subtile.;"
polar amino acid ABC transporter inner membrane subunit rbh
scnpilot_solids2_trim150_scaffold_86_269
Terrabacter sp. 28, Terrabacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

263803..264570
-----------------
DNA (768bp)
protein (256aa)
hypothetical protein n=1 Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI000382D42C rbh
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJK10520.1}; TaxID=1619947 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Terrabacter.;" source="Terrabacter sp. 28.;"
ABC transporter ATP-binding protein rbh
scnpilot_solids2_trim150_scaffold_86_270
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(264578..265519)
-----------------
DNA (942bp)
protein (314aa)
Ribosomal large subunit pseudouridine synthase A {ECO:0000313|EMBL:KJL20769.1}; EC=5.4.99.28 {ECO:0000313|EMBL:KJL20769.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003752CD0 rbh
pseudouridine synthase rbh
scnpilot_solids2_trim150_scaffold_86_271
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(265533..266018)
-----------------
DNA (486bp)
protein (162aa)
MarR family transcriptional regulator n=1 Tax=Microbacterium barkeri RepID=UPI0002FAFD7F
HTH-type transcriptional repressor NicR {ECO:0000313|EMBL:KJL28895.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
marR; transcriptional regulator
scnpilot_solids2_trim150_scaffold_86_trna_7
unknown

Not on your lists

266110..266181
-----------------
DNA (72bp)
transferRNA Gln
scnpilot_solids2_trim150_scaffold_86_272
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

266183..267613
-----------------
DNA (1431bp)
protein (477aa)
glmU; N-acetylglucosamine-1-phosphate uridyltransferase; K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] rbh
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034700F6 rbh
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
scnpilot_solids2_trim150_scaffold_86_273
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

267623..268657
-----------------
DNA (1035bp)
protein (345aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadir
psrA; phosphoribosylpyrophosphate synthetase; K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] rbh
Ribose-phosphate pyrophosphokinase n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KTC2_9MICO rbh
scnpilot_solids2_trim150_scaffold_86_274
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

268678..270228
-----------------
DNA (1551bp)
protein (517aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034BD069 rbh
Flavodoxin reductase {ECO:0000313|EMBL:EYT58411.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
flavodoxin reductase (ferredoxin-NADPH reductase) family 1 rbh
scnpilot_solids2_trim150_scaffold_86_275
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(270222..271745)
-----------------
DNA (1524bp)
protein (508aa)
signal transduction histidine kinase; K02484 two-component system, OmpR family, sensor kinase [EC:2.7.13.3] rbh
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KR39_9MICO rbh
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
scnpilot_solids2_trim150_scaffold_86_276
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(271752..272480)
-----------------
DNA (729bp)
protein (243aa)
Transcriptional regulator n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KTB7_9MICO rbh
response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; K02483 two-component system, OmpR family, response regulator rbh
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
scnpilot_solids2_trim150_scaffold_86_277
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(272559..273356)
-----------------
DNA (798bp)
protein (266aa)
Putative GntR-family transcriptional regulator n=1 Tax=Leifsonia rubra CMS 76R RepID=S7W409_9MICO
Putative GntR-family transcriptional regulator {ECO:0000313|EMBL:EPR77481.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
GntR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_86_278
Arthrobacter phenanthrenivorans, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

273479..274789
-----------------
DNA (1311bp)
protein (437aa)
hypothetical protein n=1 Tax=Arthrobacter sp. TB 23 RepID=UPI000364B495 rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIC68791.1}; TaxID=361575 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter phenanthrenivorans.;"
carbohydrate-binding protein; K02027 multiple sugar transport system substrate-binding protein rbh
scnpilot_solids2_trim150_scaffold_86_279
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

274852..275778
-----------------
DNA (927bp)
protein (309aa)
ABC transporter permease n=1 Tax=Glaciibacter superstes RepID=UPI0003B447A3 rbh
ABC-type sugar transport system {ECO:0000313|EMBL:EPR77478.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
carbohydrate ABC transporter membrane protein; K02025 multiple sugar transport system permease protein rbh
scnpilot_solids2_trim150_scaffold_86_280
Cryobacterium roopkundense, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

275775..276656
-----------------
DNA (882bp)
protein (294aa)
sugar ABC transporter permease n=1 Tax=Glaciibacter superstes RepID=UPI0003B41FDC
Sugar ABC transporter permease {ECO:0000313|EMBL:KGJ80386.1}; TaxID=1001240 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium roopkundense.;"
carbohydrate ABC transporter membrane protein; K02026 multiple sugar transport system permease protein rbh
scnpilot_solids2_trim150_scaffold_86_281
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

276653..277822
-----------------
DNA (1170bp)
protein (390aa)
Gluconate dehydratase {ECO:0000313|EMBL:EPR77475.1}; EC=4.2.1.39 {ECO:0000313|EMBL:EPR77475.1};; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
galactonate dehydratase; K01684 galactonate dehydratase [EC:4.2.1.6] rbh
Gluconate dehydratase n=1 Tax=Leifsonia rubra CMS 76R RepID=S7W3Z5_9MICO rbh
scnpilot_solids2_trim150_scaffold_86_282
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(277920..278108)
-----------------
DNA (189bp)
protein (63aa)
6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256|PIRNR:PIRNR000109}; EC=1.1.1.44 {ECO:0000256|PIRNR:PIRNR000109};; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
gnd; 6-phosphogluconate dehydrogenase; K00033 6-phosphogluconate dehydrogenase [EC:1.1.1.44]
6-phosphogluconate dehydrogenase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000345BCA6
Displaying items 271-291 of 291 in total

View Taxonomy