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scnpilot_solids2_trim150_scaffold_85_curated

Search features with annotation key words

Displaying items 31-60 of 191 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_85_curated_31
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45021..46565
DNA (1545bp) protein (515aa)
Methylase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQ40_9RHIZ
Methylase {ECO:0000313|EMBL:EYR83997.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ubiE; methylase
scnpilot_solids2_trim150_scaffold_85_curated_32
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46571..47413
DNA (843bp) protein (281aa)
Protein kinase domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ69_9RHIZ
Protein kinase domain-containing protein {ECO:0000313|EMBL:EYR83998.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative serine/threonine protein kinase
scnpilot_solids2_trim150_scaffold_85_curated_33
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47344..47841)
DNA (498bp) protein (166aa)
Type VI secretion system lysozyme-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERG6_9RHIZ
Type VI secretion system lysozyme-like protein {ECO:0000313|EMBL:EYR83976.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
type VI secretion system lysozyme-like protein; K11897 type VI secretion system protein ImpF
scnpilot_solids2_trim150_scaffold_85_curated_34
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47854..49416)
DNA (1563bp) protein (521aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C8K7_9RHIZ
Type VI secretion protein, EvpB/VC_A0108 family {ECO:0000313|EMBL:EYR83977.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11900 type VI secretion system protein ImpC
scnpilot_solids2_trim150_scaffold_85_curated_35
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49430..50929)
DNA (1500bp) protein (500aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPE7_9RHIZ
Type VI secretion protein, EvpB/VC_A0108 family {ECO:0000313|EMBL:EYR83978.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11900 type VI secretion system protein ImpC
scnpilot_solids2_trim150_scaffold_85_curated_36
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50933..51448)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYG0_9RHIZ
Type VI secretion protein, VC_A0107 family {ECO:0000313|EMBL:EYR83979.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11901 type VI secretion system protein ImpB
scnpilot_solids2_trim150_scaffold_85_curated_37
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51489..52607)
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTW3_9RHIZ
Type VI secretion-associated protein, ImpA family {ECO:0000313|EMBL:EYR83980.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
impA-related N-terminal protein; K11902 type VI secretion system protein ImpA
scnpilot_solids2_trim150_scaffold_85_curated_38
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52780..53382)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERG1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83981.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_85_curated_39
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(53394..55292)
DNA (1899bp) protein (633aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C8K1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83982.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_85_curated_40
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55364..55840)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPE2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83983.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11903 type VI secretion system secreted protein Hcp
scnpilot_solids2_trim150_scaffold_85_curated_41
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55911..58646)
DNA (2736bp) protein (912aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00036C21AD
Type VI secretion ATPase, ClpV1 family {ECO:0000313|EMBL:EYR83984.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
clpB3; ATP-dependent chaperone; type VI secretion associated protein; K11907 type VI secretion system protein VasG
scnpilot_solids2_trim150_scaffold_85_curated_42
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59120..60457)
DNA (1338bp) protein (446aa)
Cyclic nucleotide-binding protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IJ43_XANP2
cyclic nucleotide-binding protein
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:ABS68036.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
scnpilot_solids2_trim150_scaffold_85_curated_43
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60585..62852)
DNA (2268bp) protein (756aa)
aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; K11177 xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4]
Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding protein n=1 Tax=Citreicella sp. 357 RepID=I1AXP4_9RHOB
Dehydrogenase {ECO:0000313|EMBL:KEQ10634.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
scnpilot_solids2_trim150_scaffold_85_curated_44
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62842..63900)
DNA (1059bp) protein (353aa)
molybdopterin dehydrogenase FAD-binding protein; K11178 xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4]
FAD-binding molybdopterin dehydrogenase n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000349D96A
Molybdopterin dehydrogenase {ECO:0000313|EMBL:KEQ08366.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
scnpilot_solids2_trim150_scaffold_85_curated_45
bacterium YEK0313, Bacteria

Not on your lists

comp(63897..64409)
DNA (513bp) protein (171aa)
oxidoreductase with iron-sulfur subunit (EC:1.2.99.2)
Aldehyde oxidoreductase (Molybdenum iron sulfurprotein) n=1 Tax=Citreicella sp. SE45 RepID=D0DCY0_9RHOB
Carbon monoxide dehydrogenase small chain {ECO:0000313|EMBL:CEJ12968.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
scnpilot_solids2_trim150_scaffold_85_curated_46
bacterium YEK0313, Bacteria

Not on your lists


64612..65190
DNA (579bp) protein (193aa)
50S ribosomal protein L21 n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1I8S9_9BRAD
HTH-type transcriptional regulator MtrR {ECO:0000313|EMBL:CEJ12969.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
transcriptional regulator
scnpilot_solids2_trim150_scaffold_85_curated_47
unknown

Not on your lists

65566..65850
DNA (285bp) protein (95aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_85_curated_48

Not on your lists

65820..66260
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00037795DC
Marine sediment metagenome DNA, contig: S01H1_L03162 {ECO:0000313|EMBL:GAF85275.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_85_curated_49
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66652..67569)
DNA (918bp) protein (306aa)
PhzF family phenazine biosynthesis protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MFE8_9RHIZ
PhzF family phenazine biosynthesis protein {ECO:0000313|EMBL:EKF20866.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein; K06998
scnpilot_solids2_trim150_scaffold_85_curated_50
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67693..68994
DNA (1302bp) protein (434aa)
RND family efflux transporter MFP subunit n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YGZ5_9RHIZ
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein
RND family efflux transporter MFP subunit {ECO:0000313|EMBL:EHH08525.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
scnpilot_solids2_trim150_scaffold_85_curated_51
Mesorhizobium sp. LNJC394B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68998..69723
DNA (726bp) protein (242aa)
Macrolide ABC transporter ATP-binding protein n=1 Tax=Mesorhizobium sp. LNJC394B00 RepID=V7G563_9RHIZ
ABC-type antimicrobial peptide transport system, ATPase component
Macrolide ABC transporter ATP-binding protein {ECO:0000313|EMBL:ESY23798.1}; TaxID=1287274 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC394B00.;"
scnpilot_solids2_trim150_scaffold_85_curated_52
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69723..70931
DNA (1209bp) protein (403aa)
multidrug ABC transporter substrate-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035D27D0
ABC transporter permease; K02004 putative ABC transport system permease protein
Permease protein of ABC transporter {ECO:0000313|EMBL:BAB48781.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
scnpilot_solids2_trim150_scaffold_85_curated_53
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70983..71705)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TH60_MESCW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV12385.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
scnpilot_solids2_trim150_scaffold_85_curated_54
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(71720..72832)
DNA (1113bp) protein (371aa)
endonuclease n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002EF00B8
Endonuclease/exonuclease/phosphatase {ECO:0000313|EMBL:EKF44072.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
endonuclease/exonuclease/phosphatase
scnpilot_solids2_trim150_scaffold_85_curated_55
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

73073..73519
DNA (447bp) protein (149aa)
BA14K-like protein n=1 Tax=Rhizobium sp. CF142 RepID=J2L4K2_9RHIZ
BA14K-like protein {ECO:0000313|EMBL:EJJ28432.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_85_curated_56
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73571..73861)
DNA (291bp) protein (97aa)
Type IV pilus assembly PilZ n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HT89_9RHIZ
Type IV pilus assembly PilZ {ECO:0000313|EMBL:EHK56030.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
type IV pilus assembly PilZ
scnpilot_solids2_trim150_scaffold_85_curated_57
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73941..74729)
DNA (789bp) protein (263aa)
DeoR faimly transcriptional regulator n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HGN8_9RHIZ
DNA-binding transcriptional repressor {ECO:0000313|EMBL:CDX19755.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
glycerol-3-phosphate regulon repressor; K02444 DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
scnpilot_solids2_trim150_scaffold_85_curated_58
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(74880..75206)
DNA (327bp) protein (109aa)
UPI0003CEDA4F related cluster n=1 Tax=unknown RepID=UPI0003CEDA4F
integration host factor subunit alpha; K04764 integration host factor subunit alpha
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
scnpilot_solids2_trim150_scaffold_85_curated_59
Mesorhizobium sp. LSHC426A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75377..76348)
DNA (972bp) protein (324aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; TaxID=1287298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC426A00.;"
3-oxoacyl-ACP synthase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030E3000
3-oxoacyl-(acyl-carrier-protein) synthase III
scnpilot_solids2_trim150_scaffold_85_curated_60
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(76361..77416)
DNA (1056bp) protein (352aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.
UPI0003CE2C00 related cluster n=1 Tax=unknown RepID=UPI0003CE2C00
fatty acid/phospholipid synthesis protein PlsX
Displaying items 31-60 of 191 in total

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