ggKbase home page

SCNpilot_solid_1_scaffold_11

Search features with annotation key words

Displaying items 31-60 of 250 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_1_scaffold_11_31
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27907..29127
DNA (1221bp) protein (407aa)
CaiB/baiF CoA-transferase n=1 Tax=Advenella kashmirensis W13003 RepID=V8QVM4_9BURK rbh
L-carnitine dehydratase/bile acid-inducible protein F rbh
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:CDM25617.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniell
SCNpilot_solid_1_scaffold_11_32
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29209..30198
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Pseudomonas agarici RepID=UPI00035D906C rbh
TRAP transporter solute receptor rbh
TRAP transporter solute receptor {ECO:0000313|EMBL:CDM25616.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castella
SCNpilot_solid_1_scaffold_11_33
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30255..30734
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Pseudomonas agarici RepID=UPI0002FE4DD9
TRAP dicarboxylate transporter, DctQ subunit
TRAP dicarboxylate transporter, DctQ subunit {ECO:0000313|EMBL:CDM25615.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" sour
SCNpilot_solid_1_scaffold_11_34
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30727..32052
DNA (1326bp) protein (442aa)
hypothetical protein n=1 Tax=Pseudomonas agarici RepID=UPI0003083365 rbh
TRAP dicarboxylate transporter, DctM subunit rbh
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:CDM25614.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" sour
SCNpilot_solid_1_scaffold_11_35
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32102..32836
DNA (735bp) protein (245aa)
Enoyl-CoA hydratase (EC:4.2.1.17) rbh
Enoyl-CoA hydratase {ECO:0000313|EMBL:CDM25613.1}; EC=4.2.1.17 {ECO:0000313|EMBL:CDM25613.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Cas
hypothetical protein n=1 Tax=Pseudomonas agarici RepID=UPI0002E65DA8 rbh
SCNpilot_solid_1_scaffold_11_36
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32858..33340)
DNA (483bp) protein (161aa)
UPF0234 protein Bpet3698 n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=Y3698_BORPD
hypothetical protein YajQ
UPF0234 protein BN940_15856 {ECO:0000256|HAMAP-Rule:MF_00632}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellan
SCNpilot_solid_1_scaffold_11_37
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33424..33744)
DNA (321bp) protein (107aa)
Branched-chain amino acid transport n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21UH9_RHOFD
branched-chain amino acid transport
Branched-chain amino acid transport {ECO:0000313|EMBL:CDM25611.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Caste
SCNpilot_solid_1_scaffold_11_38
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33741..34388)
DNA (648bp) protein (216aa)
branched-chain amino acid permease n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034DE5C3
Branched-chain amino acid transport protein rbh
Branched-chain amino acid transport protein {ECO:0000313|EMBL:CDM25610.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" sourc
SCNpilot_solid_1_scaffold_11_39
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34525..35382)
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V8Q5_9BRAD
Phosphonate utilization associated putative membrane protein {ECO:0000313|EMBL:CEG09062.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;"
hypothetical protein
SCNpilot_solid_1_scaffold_11_40
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35505..36722
DNA (1218bp) protein (406aa)
Diguanylate cyclase n=1 Tax=Pseudomonas stutzeri DSM 10701 RepID=I7AEX0_PSEST
diguanylate cyclase/phosphodiesterase rbh
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:CDM25607.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Cas
SCNpilot_solid_1_scaffold_11_41
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36663..37445)
DNA (783bp) protein (261aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148};; TaxID=1007105 species="Bacteria; Proteobacteria;
Uracil-DNA glycosylase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GSY3_PUSST rbh
uracil-DNA glycosylase rbh
SCNpilot_solid_1_scaffold_11_42
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37442..38902)
DNA (1461bp) protein (487aa)
Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC:2.6.1.1) rbh
Transcriptional regulator, GntR family domain / Aspartate aminotransferase {ECO:0000313|EMBL:CDM25606.1}; EC=2.6.1.1 {ECO:0000313|EMBL:CDM25606.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Be
GntR family transcriptional regulator n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E7036D
SCNpilot_solid_1_scaffold_11_43
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39019..39912
DNA (894bp) protein (298aa)
transporter n=1 Tax=Kaistia granuli RepID=UPI00035C4E5D
Permease of the drug/metabolite transporter (DMT) superfamily rbh
Permease of the drug/metabolite transporter (DMT) superfamily {ECO:0000313|EMBL:CDM25605.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Caste
SCNpilot_solid_1_scaffold_11_44
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39997..40740)
DNA (744bp) protein (248aa)
Amino-acid ABC transporter ATP-binding protein 2 n=1 Tax=Achromobacter piechaudii HLE RepID=J4QX49_9BURK rbh
putative amino-acid ABC transporter, ATP-binding protein rbh
Putative amino-acid ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CDM25604.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellani
SCNpilot_solid_1_scaffold_11_45
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40737..41417)
DNA (681bp) protein (227aa)
L-cystine transporter permease TcyB n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0FDI4_9BURK rbh
Cystine ABC transporter, permease protein rbh
Cystine ABC transporter, permease protein {ECO:0000313|EMBL:CDM25603.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source=
SCNpilot_solid_1_scaffold_11_46
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41464..42261)
DNA (798bp) protein (266aa)
Putative amino-acid ABC transporter, periplasmic amino acid-binding protein n=3 Tax=Bordetella RepID=K0M964_BORPB rbh
ABC-type amino acid transport/signal transduction systems, periplasmic component/domain rbh
ABC-type amino acid transport/signal transduction systems, periplasmic component/domain {ECO:0000313|EMBL:CDM25602.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderia
SCNpilot_solid_1_scaffold_11_47
Actinomyces massiliensis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(42421..43923)
DNA (1503bp) protein (501aa)
nitrate reductase n=1 Tax=Actinomyces massiliensis RepID=UPI0002EE1A9B rbh
NCS1 nucleoside transporter family protein {ECO:0000313|EMBL:EJF46390.1}; TaxID=1125718 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces massili
nucleobase cation symporter
SCNpilot_solid_1_scaffold_11_48
Gordonia effusa, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(44017..44736)
DNA (720bp) protein (240aa)
Putative hydantoin racemase n=1 Tax=Gordonia effusa NBRC 100432 RepID=H0R4R3_9ACTO
Putative hydantoin racemase {ECO:0000313|EMBL:GAB20064.1}; TaxID=1077974 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia effusa NBRC 100432.;"
Hydantoin racemase
SCNpilot_solid_1_scaffold_11_49
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44967..46271
DNA (1305bp) protein (435aa)
C4-dicarboxylate transport protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Y1D9_9RHOO rbh
C4-dicarboxylate transport protein {ECO:0000256|HAMAP-Rule:MF_01300}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera lin
sodium:dicarboxylate symporter rbh
SCNpilot_solid_1_scaffold_11_50
Alcaligenes sp. EGD-AK7, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46274..46939
DNA (666bp) protein (222aa)
GntR family transcriptional regulator n=2 Tax=Alcaligenes RepID=M5IZX9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:ERI33644.1}; TaxID=1386079 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes sp. EGD-
transcriptional regulator, GntR family
SCNpilot_solid_1_scaffold_11_51
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47019..48572)
DNA (1554bp) protein (518aa)
Permease for cytosine/purines, uracil, thiamine, allantoin n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q126Q6_POLSJ rbh
cytosine/purines uracil thiamine allantoin permease
Permease for cytosine/purines, uracil, thiamine, allantoin {ECO:0000313|EMBL:ABE45486.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromon
SCNpilot_solid_1_scaffold_11_52
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48811..51663
DNA (2853bp) protein (951aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I066_9BURK rbh
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:CDM25599.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Cas
diguanylate cyclase/phosphodiesterase
SCNpilot_solid_1_scaffold_11_53
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51721..53871)
DNA (2151bp) protein (717aa)
Generic methyltransferase n=1 Tax=Cellvibrio japonicus (strain Ueda107) RepID=B3PGP8_CELJU rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM25598.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_11_54
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54015..55958
DNA (1944bp) protein (648aa)
Response regulator receiver domain protein (CheY-) n=1 Tax=Marinobacter nanhaiticus D15-8W RepID=N6W0V1_9ALTE rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM25596.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_11_55
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56121..57320
DNA (1200bp) protein (400aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95) rbh
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:CDM25595.1}; EC=1.1.1.95 {ECO:0000313|EMBL:CDM25595.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alca
D-3-phosphoglycerate dehydrogenase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GQV3_PUSST rbh
SCNpilot_solid_1_scaffold_11_56
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57639..59054
DNA (1416bp) protein (472aa)
Nitrite transporter n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MBZ0_ACIET
Nitrate/nitrite transporter rbh
Nitrate/nitrite transporter {ECO:0000313|EMBL:CDM25594.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniell
SCNpilot_solid_1_scaffold_11_57
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

59134..62889
DNA (3756bp) protein (1252aa)
Respiratory nitrate reductase alpha chain (EC:1.7.99.4) rbh
Respiratory nitrate reductase alpha chain {ECO:0000313|EMBL:CDM25593.1}; EC=1.7.99.4 {ECO:0000313|EMBL:CDM25593.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiale
Nitrate reductase 1, alpha chain n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I3G6_BORPD rbh
SCNpilot_solid_1_scaffold_11_58
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62902..64443
DNA (1542bp) protein (514aa)
Respiratory nitrate reductase beta chain (EC:1.7.99.4) rbh
Respiratory nitrate reductase beta chain {ECO:0000313|EMBL:CDM25592.1}; EC=1.7.99.4 {ECO:0000313|EMBL:CDM25592.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales
Nitrate reductase beta chain n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I3G4_BORPD rbh
SCNpilot_solid_1_scaffold_11_59
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64455..65147
DNA (693bp) protein (231aa)
Respiratory nitrate reductase delta chain (EC:1.7.99.4) rbh
Respiratory nitrate reductase delta chain {ECO:0000313|EMBL:CDM25591.1}; EC=1.7.99.4 {ECO:0000313|EMBL:CDM25591.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiale
Nitrate reductase delta chain n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I3G2_BORPD
SCNpilot_solid_1_scaffold_11_60
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65158..65847
DNA (690bp) protein (230aa)
Respiratory nitrate reductase gamma chain (EC:1.7.99.4) rbh
Respiratory nitrate reductase gamma chain {ECO:0000313|EMBL:CDM25590.1}; EC=1.7.99.4 {ECO:0000313|EMBL:CDM25590.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiale
Nitrate reductase gamma chain n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I3G0_BORPD rbh
Displaying items 31-60 of 250 in total

View Taxonomy