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scnpilot_solids1_trim150_scaffold_533

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_533_1
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(83..10783)
DNA (10701bp) protein (3567aa)
30S ribosomal protein S2 n=1 Tax=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) RepID=RS2_RICFE
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2
scnpilot_solids1_trim150_scaffold_533_2
unknown

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comp(10790..13720)
DNA (2931bp) protein (977aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_533_3
unknown

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comp(13730..15781)
DNA (2052bp) protein (684aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_533_4
Vermamoeba vermiformis, Vermamoeba, Eukaryota

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comp(15799..16236)
DNA (438bp) protein (146aa)
Ribosomal protein S12 n=1 Tax=Vermamoeba vermiformis RepID=D4PBI7_VERVE
Ribosomal protein S12 {ECO:0000313|EMBL:ADD62199.1}; TaxID=5778 species="Eukaryota; Amoebozoa; Tubulinea; Euamoebida; Tubulinida; Hartmannellidae; Vermamoeba.;" source="Vermamoeba vermiformis (Amoeba) (Hartmannella vermiformis).;"
30S ribosomal protein S12
scnpilot_solids1_trim150_scaffold_533_5
unknown

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comp(16212..16967)
DNA (756bp) protein (252aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_533_6
Candidatus Phytoplasma aurantifolia, Candidatus Phytoplasma, Acholeplasmatales, Mollicutes, Tenericutes, Bacteria

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comp(16975..17403)
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=1 Tax=Campylobacter rectus RM3267 RepID=B9CZ39_CAMRE
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=180978 species="Bacteria; Tenericutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma; 16SrII (Peanut WB group).;" source="Candidatus Phytoplasma aurantifolia.;"
LSU ribosomal protein L11P
scnpilot_solids1_trim150_scaffold_533_7
Helicosporidium sp. ex Simulium jonesi, Helicosporidium, Chlorellales, Trebouxiophyceae, Chlorophyta, Viridiplantae

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comp(17426..17695)
DNA (270bp) protein (90aa)
nuoK; NADH-quinone oxidoreductase subunit K (EC:1.6.99.5)
NADH dehydrogenase subunit 4L n=1 Tax=Helicosporidium sp. subsp. Simulium jonesii RepID=D3IZV9_HELSJ
NADH dehydrogenase subunit 4L {ECO:0000313|EMBL:ACT36185.1}; TaxID=145475 species="Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Helicosporidium.;" source="Helicosporidium sp. subsp. Simulium jonesii (Green alga).;"
scnpilot_solids1_trim150_scaffold_533_8
Phytophthora ramorum, Phytophthora, Peronosporales, Eukaryota

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comp(17726..18688)
DNA (963bp) protein (321aa)
NADH-ubiquinone oxidoreductase chain 1 {ECO:0000256|RuleBase:RU000473}; EC=1.6.5.3 {ECO:0000256|RuleBase:RU000473};; TaxID=164328 species="Eukaryota; Stramenopiles; Oomycetes; Peronosporales; Phytophthora.;" source="Phytophthora ramorum (Sudden oak death agent).;"
nad1; NADH dehydrogenase subunit 1; K03878 NADH-ubiquinone oxidoreductase chain 1 [EC:1.6.5.3]
NADH-ubiquinone oxidoreductase chain 1 n=6 Tax=Phytophthora RepID=A4ZHE2_PHYRM
scnpilot_solids1_trim150_scaffold_533_9
Reclinomonas americana, Reclinomonas, Eukaryota

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comp(18692..21076)
DNA (2385bp) protein (795aa)
NADH dehydrogenase subunit 11 {ECO:0000313|EMBL:AGH24330.1}; EC=1.6.5.3 {ECO:0000313|EMBL:AGH24330.1};; TaxID=1295594 species="Eukaryota; Jakobida; Histionidae; Reclinomonas.;" source="Reclinomonas americana ATCC 50283.;"
NADH-ubiquinone oxidoreductase 78 kDa subunit, mitochondrial precursor; K03934 NADH dehydrogenase (ubiquinone) Fe-S protein 1 [EC:1.6.5.3 1.6.99.3]
NADH dehydrogenase subunit 11 n=1 Tax=Reclinomonas americana ATCC 50283 RepID=M4QDZ0_RECAM
scnpilot_solids1_trim150_scaffold_533_10
unknown

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comp(21076..24411)
DNA (3336bp) protein (1112aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_533_11
Vermamoeba vermiformis, Vermamoeba, Eukaryota

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comp(24415..24807)
DNA (393bp) protein (131aa)
Ribosomal protein S13 n=1 Tax=Vermamoeba vermiformis RepID=D4PBJ9_VERVE
Ribosomal protein S13 {ECO:0000313|EMBL:ADD62211.1}; TaxID=5778 species="Eukaryota; Amoebozoa; Tubulinea; Euamoebida; Tubulinida; Hartmannellidae; Vermamoeba.;" source="Vermamoeba vermiformis (Amoeba) (Hartmannella vermiformis).;"
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
scnpilot_solids1_trim150_scaffold_533_12
unknown

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comp(24813..25037)
DNA (225bp) protein (75aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_533_13
unknown

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comp(25037..30952)
DNA (5916bp) protein (1972aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_533_14
Vermamoeba vermiformis, Vermamoeba, Eukaryota

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comp(30962..32335)
DNA (1374bp) protein (458aa)
Cytochrome b n=1 Tax=Vermamoeba vermiformis RepID=D4PBK8_VERVE rbh
Cytochrome b {ECO:0000256|RuleBase:RU000300}; TaxID=5778 species="Eukaryota; Amoebozoa; Tubulinea; Euamoebida; Tubulinida; Hartmannellidae; Vermamoeba.;" source="Vermamoeba vermiformis (Amoeba) (Hartmannella vermiformis).;"
cob, OrsajM_p40; apocytochrome b; K00412 ubiquinol-cytochrome c reductase cytochrome b subunit
scnpilot_solids1_trim150_scaffold_533_15
Rhodomonas salina, Rhodomonas, Pyrenomonadales, Cryptophyta, Eukaryota

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comp(32575..35001)
DNA (2427bp) protein (809aa)
Cytochrome c oxidase subunit 3 n=1 Tax=Rhodomonas salina RepID=Q9G8T9_RHDSA
Cytochrome c oxidase subunit 3 {ECO:0000256|RuleBase:RU003375}; TaxID=52970 species="Eukaryota; Cryptophyta; Pyrenomonadales; Pyrenomonadaceae; Rhodomonas.;" source="Rhodomonas salina (Cryptomonas salina).;"
cytochrome c oxidase polypeptide III; K02262 cytochrome c oxidase subunit 3
scnpilot_solids1_trim150_scaffold_533_16
Vermamoeba vermiformis, Vermamoeba, Eukaryota

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comp(34985..35743)
DNA (759bp) protein (253aa)
ATP synthase subunit a n=1 Tax=Vermamoeba vermiformis RepID=D4PBK7_VERVE
ATP synthase subunit a {ECO:0000256|RuleBase:RU004450}; TaxID=5778 species="Eukaryota; Amoebozoa; Tubulinea; Euamoebida; Tubulinida; Hartmannellidae; Vermamoeba.;" source="Vermamoeba vermiformis (Amoeba) (Hartmannella vermiformis).;"
ATP6; ATP synthase F0 subunit 6
scnpilot_solids1_trim150_scaffold_533_17
Chattonella marina, Chattonella, Chattonellales, Raphidophyceae, Eukaryota

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comp(35762..36346)
DNA (585bp) protein (195aa)
NADH-ubiquinone oxidoreductase chain 6 {ECO:0000256|RuleBase:RU004430}; EC=1.6.5.3 {ECO:0000256|RuleBase:RU004430};; TaxID=90936 species="Eukaryota; Stramenopiles; Raphidophyceae; Chattonellales; Chattonellaceae; Chattonella.;" source="Chattonella marina.;"
nad6; NADH dehydrogenase subunit 6; K03884 NADH-ubiquinone oxidoreductase chain 6 [EC:1.6.5.3]
NADH-ubiquinone oxidoreductase chain 6 n=1 Tax=Chattonella marina RepID=D2Z215_9STRA
scnpilot_solids1_trim150_scaffold_533_18
Ochromonas danica, Ochromonas, Chromulinales, Chrysophyceae, Eukaryota

Not on your lists

comp(36348..38510)
DNA (2163bp) protein (721aa)
NADH-ubiquinone oxidoreductase chain 5 {ECO:0000256|RuleBase:RU003404, ECO:0000256|SAAS:SAAS00061106}; EC=1.6.5.3 {ECO:0000256|RuleBase:RU003404, ECO:0000256|SAAS:SAAS00061108};; TaxID=2986 species="Eukaryota; Stramenopiles; Chrysophyceae; Chromulinales; Chromulinaceae; Ochromonas.;" source="Ochromonas danica (Golden alga).;"
NADH-ubiquinone oxidoreductase chain 5; K03883 NADH-ubiquinone oxidoreductase chain 5 [EC:1.6.5.3]
NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Ochromonas danica RepID=Q9G924_OCHDN
scnpilot_solids1_trim150_scaffold_533_19
Naegleria gruberi, Naegleria, Schizopyrenida, Heterolobosea, Eukaryota

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comp(38511..40013)
DNA (1503bp) protein (501aa)
NADH dehydrogenase subunit 2 {ECO:0000313|EMBL:AAG17811.1}; EC=1.6.5.3 {ECO:0000313|EMBL:AAG17811.1};; TaxID=5762 species="Eukaryota; Heterolobosea; Schizopyrenida; Vahlkampfiidae; Naegleria.;" source="Naegleria gruberi (Amoeba).;"
NADH dehydrogenase subunit 2 n=1 Tax=Naegleria gruberi RepID=Q9G8P3_NAEGR
nuoN; NADH dehydrogenase subunit N
scnpilot_solids1_trim150_scaffold_533_20
Prototheca wickerhamii, Prototheca, Chlorellales, Trebouxiophyceae, Chlorophyta, Viridiplantae

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comp(40032..41735)
DNA (1704bp) protein (568aa)
Cytochrome c oxidase subunit 1 {ECO:0000256|RuleBase:RU000369}; EC=1.9.3.1 {ECO:0000256|RuleBase:RU000369};; TaxID=3111 species="Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Prototheca.;" source="Prototheca wickerhamii.;"
cox1; cytochrome c oxidase subunit 1; K02256 cytochrome c oxidase subunit 1 [EC:1.9.3.1]
Cytochrome c oxidase subunit 1 n=1 Tax=Prototheca wickerhamii RepID=Q37616_PROWI
Displaying 20 items

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