ggKbase home page

scnpilot_solids1_trim150_scaffold_73

Search features with annotation key words

Displaying items 1-30 of 279 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_73_1
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1068
DNA (1068bp) protein (356aa)
Porin n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MSP4_9RHIZ
Porin {ECO:0000313|EMBL:EKF20402.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
porin
scnpilot_solids1_trim150_scaffold_73_2
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1306..2235
DNA (930bp) protein (310aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF080 RepID=J3AXW7_9RHIZ rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:KJF70043.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
LysR family transcriptional regulator rbh
scnpilot_solids1_trim150_scaffold_73_3
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2431..3240
DNA (810bp) protein (270aa)
Shikimate 5-dehydrogenase protein {ECO:0000313|EMBL:AIC25271.1}; EC=1.1.1.25 {ECO:0000313|EMBL:AIC25271.1};; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
shikimate dehydrogenase substrate binding domain-containing protein; K00014 shikimate dehydrogenase [EC:1.1.1.25]
Shikimate dehydrogenase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJM0_9RHIZ
scnpilot_solids1_trim150_scaffold_73_4
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3357..4493
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D95698 rbh
Branched-chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:AJC77365.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
branched-chain amino acid ABC transporter, amino acid-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein rbh
scnpilot_solids1_trim150_scaffold_73_5
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4558..5436
DNA (879bp) protein (293aa)
ABC transporter permease n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003006C24 rbh
Branched-chain amino acid ABC transporter permease protein {ECO:0000313|EMBL:AJC77366.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
high-affinity branched-chain amino acid transport system permease protein LivH; K01997 branched-chain amino acid transport system permease protein rbh
scnpilot_solids1_trim150_scaffold_73_6
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5436..6413
DNA (978bp) protein (326aa)
ABC transporter permease n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E80078 rbh
Branched-chain amino acid ABC transporter permease protein {ECO:0000313|EMBL:AJC77367.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
ABC transporter permease; K01998 branched-chain amino acid transport system permease protein rbh
scnpilot_solids1_trim150_scaffold_73_7
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6410..7156
DNA (747bp) protein (249aa)
ABC transporter ATP-binding protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031C30EA rbh
Branched-chain amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:AIC25275.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
branched-chain amino acid transport ATP-binding protein LivG; K01995 branched-chain amino acid transport system ATP-binding protein rbh
scnpilot_solids1_trim150_scaffold_73_8
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7159..7890
DNA (732bp) protein (244aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Rhizobium sp. CF080 RepID=J2I5Y0_9RHIZ rbh
Branched-chain amino acid ABC transporter ATPase {ECO:0000313|EMBL:KJF70048.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein rbh
scnpilot_solids1_trim150_scaffold_73_9
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7871..8755
DNA (885bp) protein (295aa)
Putative calcium binding transcriptional regulatory protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6L5_PELHB rbh
putative calcium binding transcriptional regulatory protein rbh
Putative calcium binding transcriptional regulatory protein {ECO:0000313|EMBL:AEQ51211.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
scnpilot_solids1_trim150_scaffold_73_10
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8777..10672
DNA (1896bp) protein (632aa)
4-hydroxyphenylpyruvate dioxygenase; K00457 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] rbh
3-keto-5-aminohexanoate cleavage protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031A7E32 rbh
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:EAS49675.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
scnpilot_solids1_trim150_scaffold_73_11
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

10916..11599
DNA (684bp) protein (228aa)
entB; isochorismatase EntB (EC:3.3.2.1)
Isochorismatase hydrolase id=4879726 bin=GWC2_Syntrophus__56_31 species=Hoeflea phototrophica genus=Hoeflea taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
scnpilot_solids1_trim150_scaffold_73_12
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11611..12756
DNA (1146bp) protein (382aa)
Putative oxidoreductase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZBL2_AZOL4
Oxidoreductase {ECO:0000313|EMBL:AIB11080.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
putative oxidoreductase
scnpilot_solids1_trim150_scaffold_73_13
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

12834..14009
DNA (1176bp) protein (392aa)
Uncharacterized protein n=2 Tax=Clostridium bolteae RepID=R0AYB8_9CLOT
dipeptidyl aminopeptidase
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
scnpilot_solids1_trim150_scaffold_73_14
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14012..14800
DNA (789bp) protein (263aa)
ABC-type spermidine/putrescine transport system, permease component II n=2 Tax=Rhizobium RepID=U4QCI3_9RHIZ
Polyamine ABC transporter permease {ECO:0000313|EMBL:KGE82361.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
ABC-type spermidine/putrescine transport system, permease component II
scnpilot_solids1_trim150_scaffold_73_15
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14864..15973
DNA (1110bp) protein (370aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89Q89_BRADU
ABC transporter ATP-binding protein; K02052 putative spermidine/putrescine transport system ATP-binding protein
scnpilot_solids1_trim150_scaffold_73_16
Beauveria bassiana, Beauveria, Hypocreales, Hypocreomycetidae, Ascomycota, Fungi

Not on your lists

16017..16649
DNA (633bp) protein (211aa)
Meiotic chromosome segregation protein n=1 Tax=Beauveria bassiana (strain ARSEF 2860) RepID=J5JKK0_BEAB2
Meiotic chromosome segregation protein {ECO:0000313|EMBL:EJP65953.1}; TaxID=655819 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Cordycipitaceae; Beauveria.;" source="Beauveria bassiana (strain ARSEF 2860) (White muscardine disease; fungus) (Tritirachium shiotae).;"
hypothetical protein; K09967 hypothetical protein
scnpilot_solids1_trim150_scaffold_73_17
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16676..17524
DNA (849bp) protein (283aa)
Putative ABC spermidine/putrescine transporter permease protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TSS3_9BRAD
Putative ABC spermidine/putrescine transporter permease protein {ECO:0000313|EMBL:CCE09511.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
putative ABC spermidine/putrescine transporter permease protein
scnpilot_solids1_trim150_scaffold_73_18
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

17571..18593
DNA (1023bp) protein (341aa)
Tax=RBG_16_Armatimonadetes_67_12_curated
scnpilot_solids1_trim150_scaffold_73_19
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18631..19056
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZIT0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ETX01273.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
endoribonuclease L-PSP; K07567 TdcF protein
scnpilot_solids1_trim150_scaffold_73_20
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19135..19623
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0002F17556
(2Fe-2S)-binding domain-containing protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
scnpilot_solids1_trim150_scaffold_73_21
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19610..21718
DNA (2109bp) protein (703aa)
Nicotinate dehydrogenase subunit B n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ENU6_9RHIZ rbh
Isoquinoline 1-oxidoreductase {ECO:0000313|EMBL:CDN58242.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
putative oxidoreductase protein
scnpilot_solids1_trim150_scaffold_73_22
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21998..22897)
DNA (900bp) protein (300aa)
Putative transcriptional regulator of protochatechuate degradation (LysR family) n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AYV7_AZOBR
putative transcriptional regulator of protochatechuate degradation (LysR family)
Uncharacterized protein {ECO:0000313|EMBL:AIB16168.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
scnpilot_solids1_trim150_scaffold_73_23
unknown

Not on your lists

23287..23736
DNA (450bp) protein (150aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_73_trna_2
unknown

Not on your lists

comp(23377..23449)
DNA (73bp)
transferRNA Ala
scnpilot_solids1_trim150_scaffold_73_24
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23596..23991)
DNA (396bp) protein (132aa)
UPI0003CFE8DD related cluster n=1 Tax=unknown RepID=UPI0003CFE8DD
Uncharacterized protein {ECO:0000313|EMBL:CDX50140.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
TIGR02300 family protein
scnpilot_solids1_trim150_scaffold_73_25
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24265..25620
DNA (1356bp) protein (452aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19); K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
UPI0003D0344E related cluster n=1 Tax=unknown RepID=UPI0003D0344E
scnpilot_solids1_trim150_scaffold_73_26
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25631..25957)
DNA (327bp) protein (109aa)
Lytic murein transglycosylase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EFZ2_9RHIZ
Lytic murein transglycosylase {ECO:0000313|EMBL:CCV03267.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_73_27
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26040..26879
DNA (840bp) protein (280aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
cmk; cytidylate kinase (EC:2.7.4.14); K00945 cytidylate kinase [EC:2.7.4.14] rbh
Cytidylate kinase n=1 Tax=Rhizobium sp. CF142 RepID=J2LC63_9RHIZ rbh
scnpilot_solids1_trim150_scaffold_73_28
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


27081..28787
DNA (1707bp) protein (569aa)
30S ribosomal protein S1 n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FMN9_9RHIZ rbh
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
rpsA; 30S ribosomal protein S1; K02945 small subunit ribosomal protein S1 rbh
scnpilot_solids1_trim150_scaffold_73_29
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28919..29878)
DNA (960bp) protein (320aa)
Alpha/beta hydrolase fold protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPX7_NITHX rbh
alpha/beta hydrolase fold rbh
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ABE61720.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Displaying items 1-30 of 279 in total

View Taxonomy