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scnpilot_solids1_trim150_scaffold_403

Search features with annotation key words

Displaying items 1-30 of 159 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_403_1
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..125)
DNA (123bp) protein (41aa)
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipart
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XBW2_NAKMY
scnpilot_solids1_trim150_scaffold_403_2
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(140..655)
DNA (516bp) protein (172aa)
Ribosome maturation factor RimM n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XBW3_NAKMY
16S rRNA processing protein RimM; K02860 16S rRNA processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids1_trim150_scaffold_403_3
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(679..921)
DNA (243bp) protein (81aa)
UPF0109 protein Namu_3135 n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XBW4_NAKMY
KH domain-containing protein; K06960
UPF0109 protein Namu_3135 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids1_trim150_scaffold_403_4
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(929..1453)
DNA (525bp) protein (175aa)
30S ribosomal protein S16 n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XBW5_NAKMY
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids1_trim150_scaffold_403_5
Rhodococcus sp. JVH1, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1720..2910)
DNA (1191bp) protein (397aa)
oxidoreductase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B45E78 rbh
FAD dependent oxidoreductase family protein {ECO:0000313|EMBL:EJI98166.1}; TaxID=745408 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. JVH1.;"
oxidoreductase rbh
scnpilot_solids1_trim150_scaffold_403_6
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(2924..4453)
DNA (1530bp) protein (510aa)
Signal recognition particle protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XBX2_NAKMY rbh
signal recognition particle protein; K03106 signal recognition particle subunit SRP54 rbh
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids1_trim150_scaffold_403_7
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4577..5062
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI00035EAAE6
AraC family transcriptional regulator {ECO:0000313|EMBL:EWT04925.1}; TaxID=584657 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
transcription activator, effector binding
scnpilot_solids1_trim150_scaffold_403_8
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4963..6462)
DNA (1500bp) protein (500aa)
pyridoxal-dependent decarboxylase; K01634 sphinganine-1-phosphate aldolase [EC:4.1.2.27] rbh
Pyridoxal-dependent decarboxylase n=1 Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6WD34_ACTMD rbh
Pyridoxal-dependent decarboxylase {ECO:0000313|EMBL:ACU37653.1}; TaxID=446462 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
scnpilot_solids1_trim150_scaffold_403_9
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6493..7983)
DNA (1491bp) protein (497aa)
Major facilitator superfamily MFS_1 n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SNV8_NOCSJ rbh
major facilitator transporter rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABL83493.1}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
scnpilot_solids1_trim150_scaffold_403_10
Streptomyces clavuligerus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(8135..8314)
DNA (180bp) protein (60aa)
cell division protein FtsY n=1 Tax=Streptomyces RepID=UPI00036BEA65
signal recognition particle-docking protein FtsY; K03110 fused signal recognition particle receptor
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=443255 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 /; NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602).;"
scnpilot_solids1_trim150_scaffold_403_11
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8302..9381)
DNA (1080bp) protein (360aa)
Signal recognition particle receptor FtsY n=1 Tax=Amycolatopsis azurea DSM 43854 RepID=M2NZ85_9PSEU rbh
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
ftsY; fused signal recognition particle receptor rbh
scnpilot_solids1_trim150_scaffold_403_12
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9453..12518)
DNA (3066bp) protein (1022aa)
glutamate-ammonia-ligase adenylyltransferase; K00982 glutamate-ammonia-ligase adenylyltransferase [EC:2.7.7.42] rbh
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015000}; EC=2.7.7.42 {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015004};; Glutamine-synthase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; [Glutamate--ammonia-ligase] adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DS
Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CPU9_PSEUX rbh
scnpilot_solids1_trim150_scaffold_403_13
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12520..13314)
DNA (795bp) protein (265aa)
Glutamine amidotransferase class-I n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XBY1_NAKMY
glutamine amidotransferase
Glutamine amidotransferase class-I {ECO:0000313|EMBL:ACV79485.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids1_trim150_scaffold_403_14
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13308..14144)
DNA (837bp) protein (279aa)
exodeoxyribonuclease III Xth; K01142 exodeoxyribonuclease III [EC:3.1.11.2] rbh
Exodeoxyribonuclease III Xth n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2S719_GEOOG rbh
Exodeoxyribonuclease III Xth {ECO:0000313|EMBL:ADB77511.1}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
scnpilot_solids1_trim150_scaffold_403_15
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14153..14659)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XBY3_NAKMY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV79487.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids1_trim150_scaffold_403_16
Isoptericola variabilis, Isoptericola, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14738..18367)
DNA (3630bp) protein (1210aa)
error-prone DNA polymerase (EC:2.7.7.7); K14162 error-prone DNA polymerase [EC:2.7.7.7] rbh
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902};; TaxID=743718 species="Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Isoptericola.;" source="Isoptericola variabilis (strain 225).;"
Error-prone DNA polymerase n=1 Tax=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) RepID=D1BHX7_SANKS rbh
scnpilot_solids1_trim150_scaffold_403_17
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18395..20017)
DNA (1623bp) protein (541aa)
UMUC domain protein DNA-repair protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XBY5_NAKMY rbh
UMUC domain-containing protein DNA-repair protein; K14161 protein ImuB rbh
UMUC domain protein DNA-repair protein {ECO:0000313|EMBL:ACV79489.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids1_trim150_scaffold_403_18
Brachybacterium faecium, Brachybacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20017..21510)
DNA (1494bp) protein (498aa)
HNH endonuclease n=1 Tax=Brachybacterium faecium (strain ATCC 43885 / DSM 4810 / NCIB 9860) RepID=C7MFR5_BRAFD
HNH endonuclease
HNH endonuclease {ECO:0000313|EMBL:ACU84033.1}; TaxID=446465 species="Bacteria; Actinobacteria; Micrococcales; Dermabacteraceae; Brachybacterium.;" source="Brachybacterium faecium (strain ATCC 43885 / DSM 4810 / NCIB 9860).;"
scnpilot_solids1_trim150_scaffold_403_19
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22366..23568)
DNA (1203bp) protein (401aa)
twitching motility protein pilT n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B51210 rbh
Twitching motility protein {ECO:0000313|EMBL:KHD78885.1}; TaxID=1869 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
pilT; putative type IV pilus retraction protein PilT; K02669 twitching motility protein PilT rbh
scnpilot_solids1_trim150_scaffold_403_20
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23785..25446
DNA (1662bp) protein (554aa)
type II secretion system protein E n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B3781D rbh
Type II secretion system protein E {ECO:0000313|EMBL:KHD78884.1}; TaxID=1869 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
pulE; General secretion pathway protein E; K02652 type IV pilus assembly protein PilB rbh
scnpilot_solids1_trim150_scaffold_403_21
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25493..26719
DNA (1227bp) protein (409aa)
pilus biosynthesis protein PilC n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B32926 rbh
tapC; type II secretion system protein rbh
Type II secretion system protein {ECO:0000313|EMBL:AGL14723.1}; TaxID=649831 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
scnpilot_solids1_trim150_scaffold_403_22
unknown

Not on your lists

comp(27276..27698)
DNA (423bp) protein (141aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_403_23
GWE1_OD1_38_31, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

27828..28229
DNA (402bp) protein (134aa)
Type IV pilus assembly protein PilM id=1889164 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
Type IV pilus assembly protein PilM {ECO:0000313|EMBL:KKQ69952.1}; TaxID=1618638 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Falkowbacteria) bacterium GW2011_GWE1_38_31.;"
scnpilot_solids1_trim150_scaffold_403_24
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28226..28954
DNA (729bp) protein (243aa)
hypothetical protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B72D92
Uncharacterized protein {ECO:0000313|EMBL:EXG81054.1}; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
Fimbrial assembly family protein
scnpilot_solids1_trim150_scaffold_403_25
Cellulomonas flavigena, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28956..29717
DNA (762bp) protein (254aa)
Putative uncharacterized protein n=1 Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UER9_CELFN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG74729.1}; Flags: Precursor;; TaxID=446466 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS; 134).;"
scnpilot_solids1_trim150_scaffold_403_26
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29730..32225
DNA (2496bp) protein (832aa)
hypothetical protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B40960
hypothetical protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:EXG81052.1}; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
scnpilot_solids1_trim150_scaffold_403_27
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32225..32872
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Actinoplanes sp. N902-109 RepID=R4LBX1_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EXG81051.1}; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_403_28
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32848..34599
DNA (1752bp) protein (584aa)
Beta-galactoside-specific lectin 3 (EC:3.2.2.22)
Beta-galactoside-specific lectin 3 n=1 Tax=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) RepID=G8SHS5_ACTS5
Uncharacterized protein {ECO:0000313|EMBL:KHD72873.1}; TaxID=1869 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
scnpilot_solids1_trim150_scaffold_403_29
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34627..35289)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XBY7_NAKMY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV79491.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids1_trim150_scaffold_403_30
unknown

Not on your lists

comp(35357..35530)
DNA (174bp) protein (58aa)

This feature has no annotations

Displaying items 1-30 of 159 in total

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